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<h1>Poplar genome version 3</h1> |
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<p> |
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Files listed below are formatted for visualization in the Integrated Genome |
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Browser, available from <a href="https://bioviz.org">BioViz.org</a>. |
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</p> |
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<p> |
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The file named P_trichocarpa_Aug_2012.bed.gz contains data reformatted from: |
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<ul> |
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<li>ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/annotation/Ptrichocarpa_210_defline.txt |
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<li>ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/annotation/Ptrichocarpa_210_gene_exons.gff3.gz |
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</ul> |
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<p> |
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See the <a href="annots.xml">annots.xml</a> meta-data file in this directory for |
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description and date of download. |
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</p> |
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<p> |
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Files with extension .gz were compressed and indexed using bgzip and |
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tabix tools from Heng Li. |
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</p> |
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<p> |
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The .2bit file contains sequence data reformatted from: |
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</p> |
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<p> |
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ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/assembly/Ptrichocarpa_210.fa.gz |
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</p> |
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<p> |
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Re-formatting was done using twoBitToFa from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>. |
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</p> |
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</body> |
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</html> |
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