/[genomes]/quickload/P_trichocarpa_Aug_2012/annots.xml
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Annotation of /quickload/P_trichocarpa_Aug_2012/annots.xml

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Revision 46 - (hide annotations)
Thu Sep 27 15:23:52 2018 UTC (6 years, 2 months ago) by aloraine
File MIME type: text/xml
File size: 6509 byte(s) 
Add Populus trichocarpa v2 and v3 genomes, collected from Phytozome
1 aloraine 46 <files>
2     <file
3     name="P_trichocarpa_Aug_2012.bed.gz"
4     title="Phytozome gene models"
5     description="protein-coding gene models downloaded Mar. 3, 2013 from Phytozome.net"
6     url="P_trichocarpa_Aug_2012"
7     foreground="000000"
8     name_size="14"
9     direction_type="arrow"
10     label_field="id"
11     background="FFFFFF"
12     load_hint="Whole Sequence"
13     show2tracks="false"
14     />
15     <file
16     name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/93-968.bam"
17     title="Diversity/93-968"
18     url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
19     foreground="800080"
20     name_size="14"
21     label_field="none"
22     background="FFFFFF"
23     show2tracks="false"
24     max_depth="20"
25     />
26     <file
27     name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-015.bam"
28     title="Diversity/BESC-015"
29     url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
30     foreground="800080"
31     name_size="14"
32     label_field="none"
33     background="FFFFFF"
34     show2tracks="false"
35     max_depth="20"
36     />
37     <file
38     name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-105.bam"
39     title="Diversity/BESC-105"
40     url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
41     foreground="800080"
42     name_size="14"
43     label_field="none"
44     background="FFFFFF"
45     show2tracks="false"
46     max_depth="20"
47     />
48     <file
49     name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-246.bam"
50     title="Diversity/BESC-246"
51     url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
52     foreground="800080"
53     name_size="14"
54     label_field="none"
55     background="FFFFFF"
56     show2tracks="false"
57     max_depth="20"
58     />
59     <file
60     name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-313.bam"
61     title="Diversity/BESC-313"
62     url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
63     foreground="800080"
64     name_size="14"
65     label_field="none"
66     background="FFFFFF"
67     show2tracks="false"
68     max_depth="20"
69     />
70     <file
71     name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-366.bam"
72     title="Diversity/BESC-366"
73     url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
74     foreground="800080"
75     name_size="14"
76     label_field="none"
77     background="FFFFFF"
78     show2tracks="false"
79     max_depth="20"
80     />
81     <file
82     name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-418.bam"
83     title="Diversity/BESC-418"
84     url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
85     foreground="800080"
86     name_size="14"
87     label_field="none"
88     background="FFFFFF"
89     show2tracks="false"
90     max_depth="20"
91     />
92     <file
93     name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-460.bam"
94     title="Diversity/BESC-460"
95     url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
96     foreground="800080"
97     name_size="14"
98     label_field="none"
99     background="FFFFFF"
100     show2tracks="false"
101     max_depth="20"
102     />
103     <file
104     name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-52.bam"
105     title="Diversity/BESC-52"
106     url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
107     foreground="800080"
108     name_size="14"
109     label_field="none"
110     background="FFFFFF"
111     show2tracks="false"
112     max_depth="20"
113     />
114     <file
115     name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-79.bam"
116     title="Diversity/BESC-79"
117     url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
118     foreground="800080"
119     name_size="14"
120     label_field="none"
121     background="FFFFFF"
122     show2tracks="false"
123     max_depth="20"
124     />
125     <file
126     name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/CA-01-01.bam"
127     title="Diversity/CA-01-01"
128     url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
129     foreground="800080"
130     name_size="14"
131     label_field="none"
132     background="FFFFFF"
133     show2tracks="false"
134     max_depth="20"
135     />
136     <file
137     name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/CA-05-06.bam"
138     title="Diversity/CA-05-06"
139     url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
140     foreground="800080"
141     name_size="14"
142     label_field="none"
143     background="FFFFFF"
144     show2tracks="false"
145     max_depth="20"
146     />
147     <file
148     name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/DENA-17-3.bam"
149     title="Diversity/DENA-17-3"
150     url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
151     foreground="800080"
152     name_size="14"
153     label_field="none"
154     background="FFFFFF"
155     show2tracks="false"
156     max_depth="20"
157     />
158     <file
159     name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/GW-10958.bam"
160     title="Diversity/GW-10958"
161     url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
162     foreground="800080"
163     name_size="14"
164     label_field="none"
165     background="FFFFFF"
166     show2tracks="false"
167     max_depth="20"
168     />
169     <file
170     name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/Nisqually-1.bam"
171     title="Diversity/Nisqually-1"
172     url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
173     foreground="800080"
174     name_size="14"
175     label_field="none"
176     background="FFFFFF"
177     show2tracks="true"
178     max_depth="20"
179     />
180     <file
181     name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/VNDL-27-4.bam"
182     title="Diversity/VNDL-27-4"
183     url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
184     foreground="800080"
185     name_size="14"
186     label_field="none"
187     background="FFFFFF"
188     show2tracks="false"
189     max_depth="20"
190     />
191     </files>
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