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quickload
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P_trichocarpa_Aug_2012
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annots.xml
Contents of /quickload/P_trichocarpa_Aug_2012/annots.xml
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Revision Log
Revision
46
- (
show annotations
)
Thu Sep 27 15:23:52 2018 UTC
(6 years, 2 months ago) by
aloraine
File MIME type: text/xml
File size: 6509 byte(s)
Error occurred while calculating annotation data.
Add Populus trichocarpa v2 and v3 genomes, collected from Phytozome
1
<files>
2
<file
3
name="P_trichocarpa_Aug_2012.bed.gz"
4
title="Phytozome gene models"
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description="protein-coding gene models downloaded Mar. 3, 2013 from Phytozome.net"
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url="P_trichocarpa_Aug_2012"
7
foreground="000000"
8
name_size="14"
9
direction_type="arrow"
10
label_field="id"
11
background="FFFFFF"
12
load_hint="Whole Sequence"
13
show2tracks="false"
14
/>
15
<file
16
name="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/93-968.bam
"
17
title="Diversity/93-968"
18
url="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/
"
19
foreground="800080"
20
name_size="14"
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label_field="none"
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background="FFFFFF"
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show2tracks="false"
24
max_depth="20"
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/>
26
<file
27
name="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-015.bam
"
28
title="Diversity/BESC-015"
29
url="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/
"
30
foreground="800080"
31
name_size="14"
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label_field="none"
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background="FFFFFF"
34
show2tracks="false"
35
max_depth="20"
36
/>
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<file
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name="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-105.bam
"
39
title="Diversity/BESC-105"
40
url="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/
"
41
foreground="800080"
42
name_size="14"
43
label_field="none"
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background="FFFFFF"
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show2tracks="false"
46
max_depth="20"
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/>
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<file
49
name="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-246.bam
"
50
title="Diversity/BESC-246"
51
url="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/
"
52
foreground="800080"
53
name_size="14"
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label_field="none"
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background="FFFFFF"
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show2tracks="false"
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max_depth="20"
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/>
59
<file
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name="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-313.bam
"
61
title="Diversity/BESC-313"
62
url="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/
"
63
foreground="800080"
64
name_size="14"
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label_field="none"
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background="FFFFFF"
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max_depth="20"
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/>
70
<file
71
name="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-366.bam
"
72
title="Diversity/BESC-366"
73
url="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/
"
74
foreground="800080"
75
name_size="14"
76
label_field="none"
77
background="FFFFFF"
78
show2tracks="false"
79
max_depth="20"
80
/>
81
<file
82
name="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-418.bam
"
83
title="Diversity/BESC-418"
84
url="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/
"
85
foreground="800080"
86
name_size="14"
87
label_field="none"
88
background="FFFFFF"
89
show2tracks="false"
90
max_depth="20"
91
/>
92
<file
93
name="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-460.bam
"
94
title="Diversity/BESC-460"
95
url="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/
"
96
foreground="800080"
97
name_size="14"
98
label_field="none"
99
background="FFFFFF"
100
show2tracks="false"
101
max_depth="20"
102
/>
103
<file
104
name="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-52.bam
"
105
title="Diversity/BESC-52"
106
url="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/
"
107
foreground="800080"
108
name_size="14"
109
label_field="none"
110
background="FFFFFF"
111
show2tracks="false"
112
max_depth="20"
113
/>
114
<file
115
name="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-79.bam
"
116
title="Diversity/BESC-79"
117
url="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/
"
118
foreground="800080"
119
name_size="14"
120
label_field="none"
121
background="FFFFFF"
122
show2tracks="false"
123
max_depth="20"
124
/>
125
<file
126
name="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/CA-01-01.bam
"
127
title="Diversity/CA-01-01"
128
url="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/
"
129
foreground="800080"
130
name_size="14"
131
label_field="none"
132
background="FFFFFF"
133
show2tracks="false"
134
max_depth="20"
135
/>
136
<file
137
name="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/CA-05-06.bam
"
138
title="Diversity/CA-05-06"
139
url="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/
"
140
foreground="800080"
141
name_size="14"
142
label_field="none"
143
background="FFFFFF"
144
show2tracks="false"
145
max_depth="20"
146
/>
147
<file
148
name="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/DENA-17-3.bam
"
149
title="Diversity/DENA-17-3"
150
url="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/
"
151
foreground="800080"
152
name_size="14"
153
label_field="none"
154
background="FFFFFF"
155
show2tracks="false"
156
max_depth="20"
157
/>
158
<file
159
name="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/GW-10958.bam
"
160
title="Diversity/GW-10958"
161
url="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/
"
162
foreground="800080"
163
name_size="14"
164
label_field="none"
165
background="FFFFFF"
166
show2tracks="false"
167
max_depth="20"
168
/>
169
<file
170
name="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/Nisqually-1.bam
"
171
title="Diversity/Nisqually-1"
172
url="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/
"
173
foreground="800080"
174
name_size="14"
175
label_field="none"
176
background="FFFFFF"
177
show2tracks="true"
178
max_depth="20"
179
/>
180
<file
181
name="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/VNDL-27-4.bam
"
182
title="Diversity/VNDL-27-4"
183
url="
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/
"
184
foreground="800080"
185
name_size="14"
186
label_field="none"
187
background="FFFFFF"
188
show2tracks="false"
189
max_depth="20"
190
/>
191
</files>
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