/[genomes]/quickload/P_trichocarpa_Aug_2012/annots.xml
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Contents of /quickload/P_trichocarpa_Aug_2012/annots.xml

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Revision 46 - (show annotations)
Thu Sep 27 15:23:52 2018 UTC (3 years ago) by aloraine
File MIME type: text/xml
File size: 6509 byte(s)
Add Populus trichocarpa v2 and v3 genomes, collected from Phytozome
1 <files>
2 <file
3 name="P_trichocarpa_Aug_2012.bed.gz"
4 title="Phytozome gene models"
5 description="protein-coding gene models downloaded Mar. 3, 2013 from Phytozome.net"
6 url="P_trichocarpa_Aug_2012"
7 foreground="000000"
8 name_size="14"
9 direction_type="arrow"
10 label_field="id"
11 background="FFFFFF"
12 load_hint="Whole Sequence"
13 show2tracks="false"
14 />
15 <file
16 name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/93-968.bam"
17 title="Diversity/93-968"
18 url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
19 foreground="800080"
20 name_size="14"
21 label_field="none"
22 background="FFFFFF"
23 show2tracks="false"
24 max_depth="20"
25 />
26 <file
27 name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-015.bam"
28 title="Diversity/BESC-015"
29 url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
30 foreground="800080"
31 name_size="14"
32 label_field="none"
33 background="FFFFFF"
34 show2tracks="false"
35 max_depth="20"
36 />
37 <file
38 name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-105.bam"
39 title="Diversity/BESC-105"
40 url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
41 foreground="800080"
42 name_size="14"
43 label_field="none"
44 background="FFFFFF"
45 show2tracks="false"
46 max_depth="20"
47 />
48 <file
49 name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-246.bam"
50 title="Diversity/BESC-246"
51 url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
52 foreground="800080"
53 name_size="14"
54 label_field="none"
55 background="FFFFFF"
56 show2tracks="false"
57 max_depth="20"
58 />
59 <file
60 name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-313.bam"
61 title="Diversity/BESC-313"
62 url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
63 foreground="800080"
64 name_size="14"
65 label_field="none"
66 background="FFFFFF"
67 show2tracks="false"
68 max_depth="20"
69 />
70 <file
71 name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-366.bam"
72 title="Diversity/BESC-366"
73 url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
74 foreground="800080"
75 name_size="14"
76 label_field="none"
77 background="FFFFFF"
78 show2tracks="false"
79 max_depth="20"
80 />
81 <file
82 name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-418.bam"
83 title="Diversity/BESC-418"
84 url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
85 foreground="800080"
86 name_size="14"
87 label_field="none"
88 background="FFFFFF"
89 show2tracks="false"
90 max_depth="20"
91 />
92 <file
93 name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-460.bam"
94 title="Diversity/BESC-460"
95 url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
96 foreground="800080"
97 name_size="14"
98 label_field="none"
99 background="FFFFFF"
100 show2tracks="false"
101 max_depth="20"
102 />
103 <file
104 name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-52.bam"
105 title="Diversity/BESC-52"
106 url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
107 foreground="800080"
108 name_size="14"
109 label_field="none"
110 background="FFFFFF"
111 show2tracks="false"
112 max_depth="20"
113 />
114 <file
115 name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/BESC-79.bam"
116 title="Diversity/BESC-79"
117 url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
118 foreground="800080"
119 name_size="14"
120 label_field="none"
121 background="FFFFFF"
122 show2tracks="false"
123 max_depth="20"
124 />
125 <file
126 name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/CA-01-01.bam"
127 title="Diversity/CA-01-01"
128 url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
129 foreground="800080"
130 name_size="14"
131 label_field="none"
132 background="FFFFFF"
133 show2tracks="false"
134 max_depth="20"
135 />
136 <file
137 name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/CA-05-06.bam"
138 title="Diversity/CA-05-06"
139 url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
140 foreground="800080"
141 name_size="14"
142 label_field="none"
143 background="FFFFFF"
144 show2tracks="false"
145 max_depth="20"
146 />
147 <file
148 name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/DENA-17-3.bam"
149 title="Diversity/DENA-17-3"
150 url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
151 foreground="800080"
152 name_size="14"
153 label_field="none"
154 background="FFFFFF"
155 show2tracks="false"
156 max_depth="20"
157 />
158 <file
159 name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/GW-10958.bam"
160 title="Diversity/GW-10958"
161 url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
162 foreground="800080"
163 name_size="14"
164 label_field="none"
165 background="FFFFFF"
166 show2tracks="false"
167 max_depth="20"
168 />
169 <file
170 name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/Nisqually-1.bam"
171 title="Diversity/Nisqually-1"
172 url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
173 foreground="800080"
174 name_size="14"
175 label_field="none"
176 background="FFFFFF"
177 show2tracks="true"
178 max_depth="20"
179 />
180 <file
181 name="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/VNDL-27-4.bam"
182 title="Diversity/VNDL-27-4"
183 url="ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/related_files/diversity/"
184 foreground="800080"
185 name_size="14"
186 label_field="none"
187 background="FFFFFF"
188 show2tracks="false"
189 max_depth="20"
190 />
191 </files>

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