/[genomes]/quickload/R_norvegicus_Jul_2014/HEADER.md
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Mon Nov 5 23:25:44 2018 UTC (3 years ago) by aloraine
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Add rn6 (rat)
1 aloraine 82 <html>
2     <body>
3     <h1>Rattus norvegicus (Jul 2014) rat (RGSC 6.0/rn6) genome assembly</h1>
4     <p>
5     The files listed below are formatted for visualization in the Integrated Genome
6     Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7     </p>
8     <p>
9     Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
10     Bioinformatics Table Browser. Each file is named for its corresponding table in the
11     UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
12     this directory for details.
13     </p>
14     <p>
15     Files with extension .gz were compressed and indexed using bgzip and
16     tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
17     </p>
18     <p>
19     The file named R_norvegicus_Jul_2014.2bit contains sequence data and is from the UCSC Genome
20     Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
21     <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
22     R_norvegicus_Jul_2014.2bit sequence file using twoBitInfo.
23     </p>
24     <p>
25     Both twoBitInfo and twoBitToFa are
26     available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
27     </p>
28     </body>
29     </html>

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