/[genomes]/quickload/R_norvegicus_Mar_2012/HEADER.md
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Mon Dec 10 20:02:12 2018 UTC (3 years, 8 months ago) by aloraine
File size: 1190 byte(s)
Add HEADER.md for rat & cow; Fix error
1 aloraine 50 <html>
2     <body>
3 aloraine 86 <h1>Rattus norvegicus (Mar 2012) rat (RGSC 5.0/rn5) genome assembly</h1>
4 aloraine 50 <p>
5     The files listed below are formatted for visualization in the Integrated Genome
6     Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7     </p>
8     <p>
9 aloraine 79 Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
10 aloraine 50 Bioinformatics Table Browser. Each file is named for its corresponding table in the
11     UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
12     this directory for details.
13     </p>
14     <p>
15     Files with extension .gz were compressed and indexed using bgzip and
16 aloraine 79 tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
17 aloraine 50 </p>
18     <p>
19 aloraine 80 The file named R_norvegicus_Mar_2012.2bit contains sequence data and is from the UCSC Genome
20     Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
21 aloraine 50 <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
22     R_norvegicus_Mar_2012.2bit sequence file using twoBitInfo.
23     </p>
24     <p>
25     Both twoBitInfo and twoBitToFa are
26     available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
27     </p>
28     </body>
29     </html>

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