The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.
-Annotation (bed) and alignment (psl) files were downloaded from the UCSC Genome +Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome Bioinformatics Table Browser. Each file is named for its corresponding table in the UCSC Genome database. See the annots.xml meta-data file in this directory for details.
Files with extension .gz were compressed and indexed using bgzip and -tabix tools from htslib.org.
-The file named R_norvegicus_Mar_2012.2bit contains sequence data and was downloaded from the UCSC Genome -Bioinformatics downloads -page. To convert a .2bit to fasta, use twoBitToFa. The file +The file named R_norvegicus_Mar_2012.2bit contains sequence data and is from the UCSC Genome +Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file genome.txt lists sequences and their sizes and was made from R_norvegicus_Mar_2012.2bit sequence file using twoBitInfo.