quickload/R_varieornatus_YOKOZUNA-1_Nov_2016/HEADER.md

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<h1>Ramazzottius varieornatus strain YOKOZUNA-1 (Nov 2016) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
  The gene model annotation file R_varieornatus_YOKOZUNA-1_Nov_2016_ncbiGene.bed.gz was downloaded from the UCSC Genome Bioinformatics Table Browser (Table: hub_3041413_ncbiGene) and converted to BED-detail (bed14) format July 3, 2024.
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  The file named R_varieornatus_YOKOZUNA-1_Nov_2016.2bit contains sequence data. It was made from fasta file  downloaded from <a href="https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_001949185.1//">NCBI</a>. To convert it back to fasta, use twoBitToFa. 
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  The file <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.
</p>
<p>
  You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>. 
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1	<html>
2	<body>
3	<h1>Ramazzottius varieornatus strain YOKOZUNA-1 (Nov 2016) genome assembly</h1>
4	<p>
5	The files listed below are formatted for visualization in the Integrated Genome
6	Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7	</p>
8	<p>
9	The gene model annotation file R_varieornatus_YOKOZUNA-1_Nov_2016_ncbiGene.bed.gz was downloaded from the UCSC Genome Bioinformatics Table Browser (Table: hub_3041413_ncbiGene) and converted to BED-detail (bed14) format July 3, 2024.
10	</p>
11	<p>
12	The file named R_varieornatus_YOKOZUNA-1_Nov_2016.2bit contains sequence data. It was made from fasta file downloaded from <a href="https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_001949185.1//">NCBI</a>. To convert it back to fasta, use twoBitToFa.
13	</p>
14	<p>
15	The file <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.
16	</p>
17	<p>
18	You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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