/[genomes]/quickload/S_bicolor_Jun_2013/HEADER.md
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Revision 53 - (hide annotations)
Thu Sep 27 15:54:40 2018 UTC (4 years, 4 months ago) by aloraine
File size: 1062 byte(s)
Add Sorghum bicolor v1.0 and v2.0 (June 2013) genome assemblies, collected from Phytozome
1 aloraine 53 <html>
2     <body>
3     <h1>Sorghum bicolor (Jun 2013) version 2.0 genome assembly</h1>
4     <p>
5     The files listed below are formatted for visualization in the Integrated Genome
6     Browser, available from <a href="http://www.bioviz.org/igb">BioViz.org</a>.
7     </p>
8     <p>
9     The gene model annotation file (S_bicolor_Jun_2013.bed.gz) was made from GFF and gene information files downloaded in Nov, 2014 from Phytozome.
10     </p>
11     <p>
12     The file named S_bicolor_Jun_2013.2bit contains sequence data. It
13     was made from fasta file also downloaded from Phytozome. To convert it back
14     to fasta, use twoBitToFa.
15     </p>
16     The file
17     <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.
18     </p>
19     <p>
20     For more information,
21     see <a href="http://lorainelab.org/?p=513">this post</a>
22     at <a href="http://www.lorainelab.org">LoraineLab.org</a>.
23     </p>
24     <p>
25     You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
26     </p>
27     </body>
28     </html>

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