quickload/S_bicolor_Jun_2013/HEADER.md

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<h1>Sorghum bicolor (Jun 2013) version 2.0 genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="http://www.bioviz.org/igb">BioViz.org</a>.
</p>
<p>
The gene model annotation file (S_bicolor_Jun_2013.bed.gz) was made from GFF and gene information files downloaded in Nov, 2014 from Phytozome. 
</p>
<p>
The file named S_bicolor_Jun_2013.2bit contains sequence data. It
was made from fasta file also downloaded from Phytozome. To convert it back
to fasta, use twoBitToFa. 
</p>
The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.
</p>
<p>
For more information,
see <a href="http://lorainelab.org/?p=513">this post</a>
at <a href="http://www.lorainelab.org">LoraineLab.org</a>. 
</p>
<p>
You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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1	<html>
2	<body>
3	<h1>Sorghum bicolor (Jun 2013) version 2.0 genome assembly</h1>
4	<p>
5	The files listed below are formatted for visualization in the Integrated Genome
6	Browser, available from <a href="http://www.bioviz.org/igb">BioViz.org</a>.
7	</p>
8	<p>
9	The gene model annotation file (S_bicolor_Jun_2013.bed.gz) was made from GFF and gene information files downloaded in Nov, 2014 from Phytozome.
10	</p>
11	<p>
12	The file named S_bicolor_Jun_2013.2bit contains sequence data. It
13	was made from fasta file also downloaded from Phytozome. To convert it back
14	to fasta, use twoBitToFa.
15	</p>
16	The file
17	<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.
18	</p>
19	<p>
20	For more information,
21	see <a href="http://lorainelab.org/?p=513">this post</a>
22	at <a href="http://www.lorainelab.org">LoraineLab.org</a>.
23	</p>
24	<p>
25	You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
26	</p>
27	</body>
28	</html>