/[genomes]/quickload/S_bicolor_Jun_2013/HEADER.md
ViewVC logotype

Contents of /quickload/S_bicolor_Jun_2013/HEADER.md

Parent Directory Parent Directory | Revision Log Revision Log


Revision 53 - (show annotations)
Thu Sep 27 15:54:40 2018 UTC (2 years ago) by aloraine
File size: 1062 byte(s)
Add Sorghum bicolor v1.0 and v2.0 (June 2013) genome assemblies, collected from Phytozome
1 <html>
2 <body>
3 <h1>Sorghum bicolor (Jun 2013) version 2.0 genome assembly</h1>
4 <p>
5 The files listed below are formatted for visualization in the Integrated Genome
6 Browser, available from <a href="http://www.bioviz.org/igb">BioViz.org</a>.
7 </p>
8 <p>
9 The gene model annotation file (S_bicolor_Jun_2013.bed.gz) was made from GFF and gene information files downloaded in Nov, 2014 from Phytozome.
10 </p>
11 <p>
12 The file named S_bicolor_Jun_2013.2bit contains sequence data. It
13 was made from fasta file also downloaded from Phytozome. To convert it back
14 to fasta, use twoBitToFa.
15 </p>
16 The file
17 <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.
18 </p>
19 <p>
20 For more information,
21 see <a href="http://lorainelab.org/?p=513">this post</a>
22 at <a href="http://www.lorainelab.org">LoraineLab.org</a>.
23 </p>
24 <p>
25 You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
26 </p>
27 </body>
28 </html>

  ViewVC Help
Powered by ViewVC 1.1.26