/[genomes]/quickload/S_lycopersicum_Jun_2022/HEADER.md
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Revision 164 - (show annotations)
Wed Jul 6 11:36:16 2022 UTC (4 months, 4 weeks ago) by aloraine
File size: 1002 byte(s)
IGBF-3135 Add SL5.0 tomato genome
1 <html>
2 <body>
3 <title>IGB QuickLoad site for the tomato Solanum lycopersicum</title>
4 <h1>Solanum lycopersicum, SL5.0</h1>
5 <p>
6 The data files listed below are for visualization in the Integrated Genome
7 Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
8 </p>
9 <p>
10 Sequence (.2bit) and gene models (.bed.gz) data files were re-formatted from files downloaded in July, 2022 from the <a href="https://solgenomics.net/">SolGenomics Web site</a>. The sequence data were from the SL5.0 release of the tomato genome.
11 </p>
12 <p>
13 Files with extension .gz were compressed and indexed using bgzip and
14 tabix tools from Heng Li.
15 </p>
16 <p>
17 The .2bit file was converted from fasta to .2bit format using the faToTwoBit converter from Jim Kent. The genome.txt file was created using twoBitInfo, also from Jim Kent. Executables for these and other tools from Jim Kent are available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
18 </p>
19 </body>
20 </html>

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