/[genomes]/quickload/S_lycopersicum_May_2012/HEADER.md
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Contents of /quickload/S_lycopersicum_May_2012/HEADER.md

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Revision 56 - (show annotations)
Thu Sep 27 16:09:36 2018 UTC (14 months, 2 weeks ago) by aloraine
File size: 926 byte(s)
Add Solanum lycopersicum (tomato) May 2012/SL2.40 genome assembly
1 <body>
2 <p>
3 The data files listed below are for visualization in the Integrated Genome
4 Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
5 </p>
6 <p>
7 Sequence (.2bit) and gene models (.bed.gz) data files were re-formatted from files downloaded in October, 2012 from the <a href="http://solgenomics.net/organism/Solanum_lycopersicum/genome">SolGenomics Web site</a>. The sequence data were from the ITAG2.3 release of the tomato genome.
8 </p>
9 <p>
10 Files with extension .gz were compressed and indexed using bgzip and
11 tabix tools from Heng Li.
12 </p>
13 <p>
14 The .2bit file was converted from fasta to .2bit format using the faToTwoBit converter from Jim Kent. The genome.txt file was created using twoBitInfo, also from Jim Kent. Executables for these and other tools from Jim Kent are available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
15 </p>
16 </body>
17 </html>

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