/[genomes]/quickload/S_lycopersicum_Sep_2019/HEADER.md
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Revision 118 - (show annotations)
Tue Feb 18 21:07:58 2020 UTC (2 years, 2 months ago) by aloraine
File size: 1001 byte(s)
Add sequence and annotations for tomato SL4.0 genome from ftp.solgenomics.net
1 <html>
2 <body>
3 <title>IGB QuickLoad site for the tomato Solanum lycopersicum</title>
4 <h1>Solanum lycopersicum, SL4.0</h1>
5 <p>
6 The data files listed below are for visualization in the Integrated Genome
7 Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
8 </p>
9 <p>
10 Sequence (.2bit) and gene models (.bed.gz) data files were re-formatted from files downloaded in Feb, 2020 from the <a href="https://solgenomics.net/">SolGenomics Web site</a>. The sequence data were from the SL4.0 release of the tomato genome.
11 </p>
12 <p>
13 Files with extension .gz were compressed and indexed using bgzip and
14 tabix tools from Heng Li.
15 </p>
16 <p>
17 The .2bit file was converted from fasta to .2bit format using the faToTwoBit converter from Jim Kent. The genome.txt file was created using twoBitInfo, also from Jim Kent. Executables for these and other tools from Jim Kent are available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
18 </p>
19 </body>
20 </html>

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