Log of /quickload/S_tuberosum_DM_Jul_2011

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Revision 74 - Directory Listing
Modified Thu Oct 4 16:26:23 2018 UTC (6 years, 2 months ago) by aloraine

Add gene model annotations converted from http://solanaceae.plantbiology.msu.edu/data/PGSC_DM_V403_genes.gff.zip using gff3ToBedDetail.py from https://bitbucket.org/lorainelab/genomesource commit https://bitbucket.org/lorainelab/genomesource/commits/6ab3b3f9a0c903af27ff58a8347a86edc9a3b6af?at=master followed by sed command to change chromosome names from ST4.03chNN to chrNN to match genome sequence file

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Revision 73 - Directory Listing
Modified Thu Oct 4 16:20:24 2018 UTC (6 years, 2 months ago) by aloraine

Add v4.03 July 2011 sequence for potato genome assembly

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Revision 72 - Directory Listing
Modified Thu Oct 4 16:17:53 2018 UTC (6 years, 2 months ago) by aloraine

Remove Jan 2016 sequence, update chromosome listing file for Jul 2011 4.03 assembly, add annotations

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Revision 71 - Directory Listing
Modified Thu Oct 4 15:49:27 2018 UTC (6 years, 2 months ago) by aloraine
Copied from: quickload/S_tuberosum_DM_Jan_2016 revision 70

Add potato version 4.03 genome assembly from https://www.nature.com/articles/nature10158 and http://solanaceae.plantbiology.msu.edu

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Revision 68 - Directory Listing
Added Wed Oct 3 15:02:04 2018 UTC (6 years, 2 months ago) by aloraine
Original Path: quickload/S_tuberosum_DM_Jan_2016

Adding potato v4.04 genome from SpudDB http://solanaceae.plantbiology.msu.edu