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<h1>JGI4.2/xenTro3 Xenopus tropicalis genome, Nov 2009 genome assembly</h1> |
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The files listed below are formatted for visualization in the Integrated Genome |
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Browser, available from <a href="https://bioviz.org">BioViz.org</a>. |
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</p> |
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Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome |
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Bioinformatics Table Browser. Each file is named for its corresponding table in the |
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UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in |
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this directory for details. |
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Files with extension .gz were compressed and indexed using bgzip and |
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tabix tools from <a href="https://www.htslib.org">htslib.org</a>. |
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The file named X_tropicalis_Nov_2009.2bit contains sequence data and was downloaded from the UCSC Genome |
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Bioinformatics <a href="http://hgdownload-test.sdsc.edu/downloads.html">downloads |
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page</a>. To convert a .2bit to fasta, use twoBitToFa. The file |
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<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from |
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X_tropicalis_Nov_2009.2bit sequence file using twoBitInfo. |
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Both twoBitInfo and twoBitToFa are |
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available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>. |
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