/[genomes]/quickload/X_tropicalis_Jul_2016/HEADER.md
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quickload/X_tropicalis_Nov_2009/HEADER.md revision 113 by aloraine, Sat Oct 27 01:44:05 2018 UTC quickload/X_tropicalis_Jul_2016/HEADER.md revision 115 by aloraine, Sun Feb 16 03:49:40 2020 UTC
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1  <html>  <html>
2  <body>  <body>
3  <h1>JGI4.2/xenTro3 Xenopus tropicalis genome, Nov 2009 genome assembly</h1>  <h1>JGI9.1/xenTro9 Xenopus tropicalis genome, Jul 2016 genome assembly</h1>
4  <p>  <p>
5  The files listed below are formatted for visualization in the Integrated Genome  The files listed below are formatted for visualization in the Integrated Genome
6  Browser, available from <a href="https://bioviz.org">BioViz.org</a>.  Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
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16  tabix tools from <a href="https://www.htslib.org">htslib.org</a>.  tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
17  </p>  </p>
18  <p>  <p>
19  The file named X_tropicalis_Nov_2009.2bit contains sequence data and is from the UCSC Genome  The file named X_tropicalis_Jul_2016.2bit contains sequence data and is from the UCSC Genome
20  Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file  Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
21  <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from  <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
22  X_tropicalis_Nov_2009.2bit sequence file using twoBitInfo.  X_tropicalis_Jul_2016.2bit sequence file using twoBitInfo.
23  </p>  </p>
24  <p>  <p>
25  Both twoBitInfo and twoBitToFa are  Both twoBitInfo and twoBitToFa are
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