/[genomes]/quickload/contents.txt
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Annotation of /quickload/contents.txt

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Fri Jan 1 18:12:10 2021 UTC (3 months, 1 week ago) by aloraine
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Add Physcomitrella Jan 2018 v3.3 genome and annotations from Phytozome 318
1 aloraine 106 A_gambiae_Oct_2006 Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3)
2 aloraine 7 A_gambiae_Feb_2003 Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2)
3     A_lyrata_Apr_2011 Arabidopsis lyrata JGI v1.0 assembly
4     A_melanoleuca_Dec_2009 Ailuropoda melanoleuca (Dec 2009) giant panda (ailMel1/BGI-Shenzhen AilMel 1.0)
5     A_mellifera_Jan_2005 Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 )
6 aloraine 106 A_rostrata_Oct_2016 Anguilla rostrata (Oct 2016) American eel (LTYT01/Dryad)
7 aloraine 7 A_thaliana_Jun_2009 Arabidopsis thaliana TAIR9
8     A_thaliana_Apr_2008 Arabidopsis thaliana TAIR8
9     A_thaliana_Jan_2004 Arabidopsis thaliana
10     B_distachyon_Aug_2010 Brachypodium distachyon JGI v1.0 8x assembly
11 aloraine 86 B_taurus_Jun_2014 Bos taurus (Jun 2014) cow (UMD_3.1.1/bosTau8)
12 aloraine 7 B_taurus_Oct_2011 Bos taurus (Oct 2011) cow (Baylor Btau_4.6.1/bosTau7)
13 aloraine 88 C_albicans_SC5314_Jun_2014 Candida albicans SC5314 Assembly 22
14 aloraine 7 C_albicans_SC5314_Nov_2008 Candida albicans SC5314 Assembly 21
15 aloraine 106 C_albicans_WO-1_Dec_2013 Candida albicans WO-1 Dec 2013
16 aloraine 7 C_albicans_WO-1_Jul_2010 Candida albicans WO-1
17 aloraine 88 C_elegans_Feb_2013 C. elegans Feb 2013 (WBcel235/ce11)
18 aloraine 7 C_elegans_May_2008 C. elegans May 2008 (WS190/ce6)
19     C_elegans_Oct_2010 C. elegans Oct 2010 (WS220/ce10)
20     C_papaya_Aug_2010 Carica papaya
21     C_porcellus_Feb_2008 Cavia porcellus (Feb 2008) guinea pig (cavPor3)
22     C_reinhardtii_Nov_2010 Chlamydomonas reinhardtii JGI v4 assembly
23 aloraine 106 C_sabaeus_Mar_2014 Chlorocebus sabaeus (Mar 2014) green monkey (Chlorocebus_sabeus 1.1/chlSab2)
24 aloraine 7 C_sativa_DH55_Apr_2014 Camelina sativa (false flax) April 2014
25 aloraine 122 C_sativa_CBDRx_Dec_2018 Cannabis sativa CBDRx Dec 2018
26 aloraine 29 D_discoideum_Ax4_May_2009 Dictyostelim discoideum (slime mold) May 2009
27 aloraine 106 D_magna_Apr_2010 Daphnia magna Xinb3 v2.4
28     D_magna_Jan_2019 Daphnia magna SK v1.0
29 aloraine 7 D_melanogaster_Jul_2014 Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06)
30     D_melanogaster_Apr_2006 Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5)
31 aloraine 106 D_pulex_Feb_2011 Daphnia pulex TCO v1.0
32     D_pulex_Sep_2016 Daphnia pulex PA42 v3.0
33 aloraine 87 D_rerio_May_2017 Danio rerio (May 2017) zebrafish (GRCz11/danRer11)
34     D_rerio_Jul_2010 Danio rerio (Jul 2010) zebrafish (Zv9/danRer7)
35 aloraine 7 E_caballus_Sep_2007 Equus caballus (Sep 2007) horse (equCab2)
36     E_coli_K12-MG1655_Jan_2012 Escherichia coli K12-MG1655
37     F_catus_Sep_2011 Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5)
38     F_vesca_Sep_2011 Fragaria vesca (woodland strawberry) v1.
39     H_sapiens_Dec_2013 Homo sapiens (Dec 2013) human being (GRCh38/hg38)
40     H_sapiens_Feb_2009 Homo sapiens (Feb 2009) human being (GRCh37/hg19)
41     H_sapiens_Mar_2006 Homo sapiens (Mar 2006) human being (NCBI36/hg18)
42     H_sapiens_May_2004 Homo sapiens (May 2004) human being (NCBI35/hg17)
43     G_gallus_Nov_2011 Gallus gallus (Nov 2011) chicken (galGal4/ICGC Gallus-gallus-4.0)
44     G_max_Aug_2010 Glycine max Glyma1
45     G_max_Jan_2014 Glycine max Gmax_275_v2.0
46     L_africana_Jul_2009 Loxodonta africana (Jul 2009) elephant (loxAfr3)
47 aloraine 29 L_passim_Apr_2014 Lotmaria passim, strain SF, Crithidia mellificae strain SF, whole genome shotgun sequencing project
48 aloraine 7 M_acuminata_DH_Pahang_Jan_2016 Musa acuminata DH Pahang (Jan 2016) banana (v2)
49     M_domestica_Borkh_Jun_2017 Malus domestica Borkh (GDDH13 Version 1.1) apple
50     M_musculus_Dec_2011 Mus musculus (Dec 2011) mouse (GRCm38/mm10)
51     M_musculus_Jul_2007 Mus musculus (Jul 2007) mouse (NCBI37/mm9)
52     M_musculus_Feb_2006 Mus musculus (Feb 2006) mouse (NCBI36/mm8)
53 aloraine 77 M_musculus_Aug_2005 Mus musculus (Aug 2005) mouse (NCBI35/mm7)
54 aloraine 7 M_truncatula_Mar_2009 Medicago truncatula Mt3.0 release
55     N_vectensis_Jun_2007 Nematostella vectensis, starlet sea anemone
56     O_sativa_japonica_Jun_2009 Oryza sativa japonica June 2009
57     O_sativa_japonica_Oct_2011 Oryza sativa japonica variety Os-Nipponbare-Reference-IRGSP-1.0
58     O_aries_Feb_2010 Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1)
59     P_patens_Jan_2008 Physcomitrella patens Jan 2008
60 aloraine 140 P_patens_Jan_2018 Physcomitrella patens (Jan 2018) v3.3
61 aloraine 7 P_persica_Apr_2010 Prunus persica v1
62     P_trichocarpa_Jan_2010 Populus trichocarpa v2
63     P_trichocarpa_Aug_2012 Populus trichocarpa v3
64     P_troglodytes_Oct_2010 Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3)
65     R_communis_May_2008 Ricinis communis TIGR/JCVI v0.1 assembly, castor bean
66 aloraine 83 R_norvegicus_Jul_2014 Rattus norvegicus (Jul 2014) rat (RGSC 6.0/rn6)
67     R_norvegicus_Mar_2012 Rattus norvegicus (Mar 2012) rat (RGSC 5.0/rn5)
68 aloraine 7 S_bicolor_Jan_2009 Sorghum bicolor v1.0
69     S_bicolor_Jun_2013 Sorghum bicolor v2.0 (June 2013)
70     S_cerevisiae_Apr_2011 S. cerevisiae strain S288C (Apr 2011) budding yeast (sacCer3)
71     S_cerevisiae_Jun_2008 S. cerevisiae strain S288C (Jun 2008) budding yeast (sacCer2)
72     S_lycopersicum_May_2012 Solanum lycopersicum (May 2012) tomato (SL2.40)
73     S_lycopersicum_Feb_2014 Solanum lycopersicum (Feb 2014) tomato (SL2.50)
74     S_lycopersicum_Feb_2017 Solanum lycopersicum (Feb 2017) tomato (SL3.0)
75 aloraine 119 S_lycopersicum_Sep_2019 Solanum lycopersicum (Sep 2019) tomato (SL4.0)
76 aloraine 7 S_pombe_May_2012 S. pombe (May 2012) fission yeast
77 aloraine 70 S_tuberosum_DM_Jul_2011 Solanum tuberosum Group Phureja clone DM1-3 (potato) v4.03
78 aloraine 7 T_castaneum_Mar_2008 Tribolium castaneum (March 2008) red flour beetle
79     T_kodakaraensis_KOD1_May_2004 Thermococcus kodakaraensis May 2004
80     T_parvula_May_2012 Thellungiella parvula (salt cress) v2, May 2012
81     T_rubripes_Oct_2011 Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3)
82 aloraine 123 T_aestivum_Aug_2018 Triticum aestivum (IWGSC v1)
83 aloraine 7 V_carteri_Jul_2010 Volvox carteri f. nagariensis, Eve Jul 2010
84     V_vinifera_Mar_2010 12X March 2010 wine grape draft genome Vitis vinifera
85     X_tropicalis_Nov_2009 JGI4.2/xenTro3 Xenopus tropicalis genome, Nov 2009
86 aloraine 115 X_tropicalis_Jul_2016 JGI9.1/xenTro9 Xenopus tropicalis genome, Jul 2016
87 aloraine 7 Y_lipolytica_CLIB122_Jul_2004 Yarrowia lipolytica CLIB122 (Jul 2004) Assembly GCA_000002525.2
88     Y_lipolytica_PO1f_May_2014 Yarrowia lipolytica PO1f (May 2014) Assembly GCA_000590845.2
89     Y_lipolytica_WSH-Z06_Mar_2014 Yarrowia lipolytica WSH-Z06 (Mar 2014) Assembly GCA_000613155.1
90     Z_mays_B73_Mar_2010 Zea Mays B73 RefGenv2

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