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revision 68 by aloraine, Wed Oct 3 15:02:04 2018 UTC revision 209 by pkulzer, Tue Feb 18 19:06:17 2025 UTC
# Line 1  Line 1 
1    A_albopictus_Jan_2024   Aedes albopictus (Jan 2024) Asian tiger mosquito (AalbF5)
2    A_gambiae_Oct_2006      Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3)
3  A_gambiae_Feb_2003      Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2)  A_gambiae_Feb_2003      Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2)
4  A_lyrata_Apr_2011       Arabidopsis lyrata JGI v1.0 assembly  A_lyrata_Apr_2011       Arabidopsis lyrata JGI v1.0 assembly
5  A_melanoleuca_Dec_2009  Ailuropoda melanoleuca (Dec 2009) giant panda (ailMel1/BGI-Shenzhen AilMel 1.0)  A_melanoleuca_Dec_2009  Ailuropoda melanoleuca (Dec 2009) giant panda (ailMel1/BGI-Shenzhen AilMel 1.0)
6  A_mellifera_Jan_2005    Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 )  A_mellifera_Jan_2005    Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 )
7    A_rostrata_Oct_2016     Anguilla rostrata (Oct 2016) American eel (LTYT01/Dryad)
8  A_thaliana_Jun_2009     Arabidopsis thaliana TAIR9  A_thaliana_Jun_2009     Arabidopsis thaliana TAIR9
9  A_thaliana_Apr_2008     Arabidopsis thaliana TAIR8  A_thaliana_Apr_2008     Arabidopsis thaliana TAIR8
10  A_thaliana_Jan_2004     Arabidopsis thaliana  A_thaliana_Jan_2004     Arabidopsis thaliana
11  B_distachyon_Aug_2010   Brachypodium distachyon JGI v1.0 8x assembly  B_distachyon_Aug_2010   Brachypodium distachyon JGI v1.0 8x assembly
12    B_taurus_Jun_2014       Bos taurus (Jun 2014) cow (UMD_3.1.1/bosTau8)
13  B_taurus_Oct_2011       Bos taurus (Oct 2011) cow (Baylor Btau_4.6.1/bosTau7)  B_taurus_Oct_2011       Bos taurus (Oct 2011) cow (Baylor Btau_4.6.1/bosTau7)
14    C_albicans_SC5314_Jun_2014      Candida albicans SC5314 Assembly 22
15  C_albicans_SC5314_Nov_2008      Candida albicans SC5314 Assembly 21  C_albicans_SC5314_Nov_2008      Candida albicans SC5314 Assembly 21
16    C_albicans_WO-1_Dec_2013        Candida albicans WO-1 Dec 2013
17  C_albicans_WO-1_Jul_2010        Candida albicans WO-1  C_albicans_WO-1_Jul_2010        Candida albicans WO-1
18    C_elegans_Feb_2013      C. elegans Feb 2013 (WBcel235/ce11)
19  C_elegans_May_2008      C. elegans May 2008 (WS190/ce6)  C_elegans_May_2008      C. elegans May 2008 (WS190/ce6)
20  C_elegans_Oct_2010      C. elegans Oct 2010 (WS220/ce10)  C_elegans_Oct_2010      C. elegans Oct 2010 (WS220/ce10)
21  C_papaya_Aug_2010       Carica papaya  C_papaya_Aug_2010       Carica papaya
22  C_porcellus_Feb_2008    Cavia porcellus (Feb 2008) guinea pig (cavPor3)  C_porcellus_Feb_2008    Cavia porcellus (Feb 2008) guinea pig (cavPor3)
23  C_reinhardtii_Nov_2010  Chlamydomonas reinhardtii JGI v4 assembly  C_reinhardtii_Nov_2010  Chlamydomonas reinhardtii JGI v4 assembly
24    C_sabaeus_Mar_2014      Chlorocebus sabaeus (Mar 2014) green monkey (Chlorocebus_sabeus 1.1/chlSab2)
25  C_sativa_DH55_Apr_2014  Camelina sativa (false flax) April 2014  C_sativa_DH55_Apr_2014  Camelina sativa (false flax) April 2014
26    C_sativa_CBDRx_Dec_2018 Cannabis sativa CBDRx Dec 2018
27    C_teleta_Jan_2013       Capitella teleta Jan 2013 (Capca1)
28    D_dama_Nov_2023 Dama dama (Nov 2023) fallow deer (ASM3311817v1)
29  D_discoideum_Ax4_May_2009       Dictyostelim discoideum (slime mold) May 2009  D_discoideum_Ax4_May_2009       Dictyostelim discoideum (slime mold) May 2009
30    D_magna_Apr_2010        Daphnia magna Xinb3 v2.4
31    D_magna_Jan_2019        Daphnia magna SK v1.0
32    D_melanogaster_Aug_2014 Drosophila melanogaster (Aug 2014) fruit fly (BDGP Release 6 + ISO1 MT/dm6)
33  D_melanogaster_Jul_2014 Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06)  D_melanogaster_Jul_2014 Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06)
34  D_melanogaster_Apr_2006 Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5)  D_melanogaster_Apr_2006 Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5)
35  D_rerio_Jul_2010        Danio rerio (Jul 2010) zebrafish (danRer7/Zv9)  D_pulex_Feb_2011        Daphnia pulex TCO v1.0
36    D_pulex_Sep_2016        Daphnia pulex PA42 v3.0
37    D_rerio_May_2017        Danio rerio (May 2017) zebrafish (GRCz11/danRer11)
38    D_rerio_Jul_2010        Danio rerio (Jul 2010) zebrafish (Zv9/danRer7)
39  E_caballus_Sep_2007     Equus caballus (Sep 2007) horse (equCab2)  E_caballus_Sep_2007     Equus caballus (Sep 2007) horse (equCab2)
40  E_coli_K12-MG1655_Jan_2012      Escherichia coli K12-MG1655  E_coli_K12-MG1655_Jan_2012      Escherichia coli K12-MG1655
41    F_albicollis_Jun_2013   Ficedula albicollis Jun 2013 (FicAlb1.5)
42  F_catus_Sep_2011        Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5)  F_catus_Sep_2011        Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5)
43  F_vesca_Sep_2011        Fragaria vesca (woodland strawberry) v1.  F_vesca_Sep_2011        Fragaria vesca (woodland strawberry) v1.
44    H_exemplaris_Z151_Apr_2017      Hypsibius exemplaris strain Z151 (Apr 2017) water bear (nHd_3.1)
45  H_sapiens_Dec_2013      Homo sapiens (Dec 2013) human being (GRCh38/hg38)  H_sapiens_Dec_2013      Homo sapiens (Dec 2013) human being (GRCh38/hg38)
46  H_sapiens_Feb_2009      Homo sapiens (Feb 2009) human being (GRCh37/hg19)  H_sapiens_Feb_2009      Homo sapiens (Feb 2009) human being (GRCh37/hg19)
47  H_sapiens_Mar_2006      Homo sapiens (Mar 2006) human being (NCBI36/hg18)  H_sapiens_Mar_2006      Homo sapiens (Mar 2006) human being (NCBI36/hg18)
48  H_sapiens_May_2004      Homo sapiens (May 2004) human being (NCBI35/hg17)  H_sapiens_May_2004      Homo sapiens (May 2004) human being (NCBI35/hg17)
49    H_vulgaris_Apr_2024     Hydra vulgaris (Apr 2024) Swiftwater hydra (HydraT2T_AEP)
50  G_gallus_Nov_2011       Gallus gallus (Nov 2011) chicken (galGal4/ICGC Gallus-gallus-4.0)  G_gallus_Nov_2011       Gallus gallus (Nov 2011) chicken (galGal4/ICGC Gallus-gallus-4.0)
51  G_max_Aug_2010  Glycine max Glyma1  G_max_Aug_2010  Glycine max Glyma1
52  G_max_Jan_2014  Glycine max Gmax_275_v2.0  G_max_Jan_2014  Glycine max Gmax_275_v2.0
# Line 34  L_africana_Jul_2009    Loxodonta africana ( Line 54  L_africana_Jul_2009    Loxodonta africana (
54  L_passim_Apr_2014       Lotmaria passim, strain SF, Crithidia mellificae strain SF, whole genome shotgun sequencing project  L_passim_Apr_2014       Lotmaria passim, strain SF, Crithidia mellificae strain SF, whole genome shotgun sequencing project
55  M_acuminata_DH_Pahang_Jan_2016  Musa acuminata DH Pahang (Jan 2016) banana (v2)  M_acuminata_DH_Pahang_Jan_2016  Musa acuminata DH Pahang (Jan 2016) banana (v2)
56  M_domestica_Borkh_Jun_2017      Malus domestica Borkh (GDDH13 Version 1.1) apple  M_domestica_Borkh_Jun_2017      Malus domestica Borkh (GDDH13 Version 1.1) apple
57    M_musculus_Jun_2020     Mus musculus (Jun 2020) mouse (GRCm39/mm39)
58  M_musculus_Dec_2011     Mus musculus (Dec 2011) mouse (GRCm38/mm10)  M_musculus_Dec_2011     Mus musculus (Dec 2011) mouse (GRCm38/mm10)
59  M_musculus_Jul_2007     Mus musculus (Jul 2007) mouse (NCBI37/mm9)  M_musculus_Jul_2007     Mus musculus (Jul 2007) mouse (NCBI37/mm9)
60  M_musculus_Feb_2006     Mus musculus (Feb 2006) mouse (NCBI36/mm8)  M_musculus_Feb_2006     Mus musculus (Feb 2006) mouse (NCBI36/mm8)
61    M_musculus_Aug_2005     Mus musculus (Aug 2005) mouse (NCBI35/mm7)
62  M_truncatula_Mar_2009   Medicago truncatula Mt3.0 release  M_truncatula_Mar_2009   Medicago truncatula Mt3.0 release
63  N_vectensis_Jun_2007    Nematostella vectensis, starlet sea anemone  N_vectensis_Jun_2007    Nematostella vectensis, starlet sea anemone
64    O_latipes_Jul_2017      Oryzias latipes (Jul 2017) Japanese rice fish (Medaka) (ASM223467v1)
65  O_sativa_japonica_Jun_2009      Oryza sativa japonica June 2009  O_sativa_japonica_Jun_2009      Oryza sativa japonica June 2009
66  O_sativa_japonica_Oct_2011      Oryza sativa japonica variety Os-Nipponbare-Reference-IRGSP-1.0  O_sativa_japonica_Oct_2011      Oryza sativa japonica variety Os-Nipponbare-Reference-IRGSP-1.0
67  O_aries_Feb_2010        Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1)  O_aries_Feb_2010        Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1)
68  P_patens_Jan_2008       Physcomitrella patens Jan 2008  P_patens_Jan_2008       Physcomitrella patens Jan 2008
69    P_patens_Jan_2018       Physcomitrella patens (Jan 2018) v3.3
70  P_persica_Apr_2010      Prunus persica v1  P_persica_Apr_2010      Prunus persica v1
71  P_trichocarpa_Jan_2010  Populus trichocarpa v2  P_trichocarpa_Jan_2010  Populus trichocarpa v2
72  P_trichocarpa_Aug_2012  Populus trichocarpa v3  P_trichocarpa_Aug_2012  Populus trichocarpa v3
73  P_troglodytes_Oct_2010  Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3)  P_troglodytes_Oct_2010  Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3)
74  R_communis_May_2008     Ricinis communis TIGR/JCVI v0.1 assembly, castor bean  R_communis_May_2008     Ricinis communis TIGR/JCVI v0.1 assembly, castor bean
75  R_norvegicus_Mar_2012   Rattus Norvegicus (Mar 2012) rat (RGSC 5.0/rn5)  R_norvegicus_Nov_2020   Rattus norvegicus (Nov 2020) rat (mRatBN7.2/rn7)
76    R_norvegicus_Jul_2014   Rattus norvegicus (Jul 2014) rat (RGSC 6.0/rn6)
77    R_norvegicus_Mar_2012   Rattus norvegicus (Mar 2012) rat (RGSC 5.0/rn5)
78    R_varieornatus_YOKOZUNA-1_Nov_2016      Ramazzottius varieornatus strain YOKOZUNA-1 (Nov 2016) water bear (Rvar_4.0)
79  S_bicolor_Jan_2009      Sorghum bicolor v1.0  S_bicolor_Jan_2009      Sorghum bicolor v1.0
80  S_bicolor_Jun_2013      Sorghum bicolor v2.0 (June 2013)  S_bicolor_Jun_2013      Sorghum bicolor v2.0 (June 2013)
81  S_cerevisiae_Apr_2011   S. cerevisiae strain S288C (Apr 2011) budding yeast (sacCer3)  S_cerevisiae_Apr_2011   S. cerevisiae strain S288C (Apr 2011) budding yeast (sacCer3)
# Line 56  S_cerevisiae_Jun_2008  S. cerevisiae stra Line 83  S_cerevisiae_Jun_2008  S. cerevisiae stra
83  S_lycopersicum_May_2012 Solanum lycopersicum (May 2012) tomato (SL2.40)  S_lycopersicum_May_2012 Solanum lycopersicum (May 2012) tomato (SL2.40)
84  S_lycopersicum_Feb_2014 Solanum lycopersicum (Feb 2014) tomato (SL2.50)  S_lycopersicum_Feb_2014 Solanum lycopersicum (Feb 2014) tomato (SL2.50)
85  S_lycopersicum_Feb_2017 Solanum lycopersicum (Feb 2017) tomato (SL3.0)  S_lycopersicum_Feb_2017 Solanum lycopersicum (Feb 2017) tomato (SL3.0)
86    S_lycopersicum_Sep_2019 Solanum lycopersicum (Sep 2019) tomato (SL4.0)
87    S_lycopersicum_Jun_2022 Solanum lycopersicum (Jun 2022) tomato (SL5.0)
88  S_pombe_May_2012        S. pombe (May 2012) fission yeast  S_pombe_May_2012        S. pombe (May 2012) fission yeast
89  S_tuberosum_DM_Jan_2016 Solanum tuberosum Group Phureja clone DM1-3 (potato) v4.04  S_tuberosum_DM_Jul_2011 Solanum tuberosum Group Phureja clone DM1-3 (potato) v4.03
90  T_castaneum_Mar_2008    Tribolium castaneum (March 2008) red flour beetle  T_castaneum_Mar_2008    Tribolium castaneum (March 2008) red flour beetle
91  T_kodakaraensis_KOD1_May_2004   Thermococcus kodakaraensis May 2004  T_kodakaraensis_KOD1_May_2004   Thermococcus kodakaraensis May 2004
92  T_parvula_May_2012      Thellungiella parvula (salt cress) v2, May 2012  T_parvula_May_2012      Thellungiella parvula (salt cress) v2, May 2012
93  T_rubripes_Oct_2011     Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3)  T_rubripes_Oct_2011     Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3)
94    T_aestivum_Aug_2018     Triticum aestivum (IWGSC v1)
95    V_cardui_Feb_2021       Vanessa cardui (Feb 2021) painted lady (ilVanCard2.1)
96  V_carteri_Jul_2010      Volvox carteri f. nagariensis, Eve Jul 2010  V_carteri_Jul_2010      Volvox carteri f. nagariensis, Eve Jul 2010
97  V_vinifera_Mar_2010     12X March 2010 wine grape draft genome Vitis vinifera  V_vinifera_Mar_2010     12X March 2010 wine grape draft genome Vitis vinifera
98  X_tropicalis_Nov_2009   JGI4.2/xenTro3 Xenopus tropicalis genome, Nov 2009  X_tropicalis_Nov_2009   JGI4.2/xenTro3 Xenopus tropicalis genome, Nov 2009
99    X_tropicalis_Jul_2016   JGI9.1/xenTro9 Xenopus tropicalis genome, Jul 2016
100  Y_lipolytica_CLIB122_Jul_2004   Yarrowia lipolytica CLIB122 (Jul 2004) Assembly GCA_000002525.2  Y_lipolytica_CLIB122_Jul_2004   Yarrowia lipolytica CLIB122 (Jul 2004) Assembly GCA_000002525.2
101  Y_lipolytica_PO1f_May_2014      Yarrowia lipolytica PO1f (May 2014) Assembly GCA_000590845.2  Y_lipolytica_PO1f_May_2014      Yarrowia lipolytica PO1f (May 2014) Assembly GCA_000590845.2
102  Y_lipolytica_WSH-Z06_Mar_2014   Yarrowia lipolytica WSH-Z06 (Mar 2014) Assembly GCA_000613155.1  Y_lipolytica_WSH-Z06_Mar_2014   Yarrowia lipolytica WSH-Z06 (Mar 2014) Assembly GCA_000613155.1
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