/[genomes]/quickload/contents.txt
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revision 85 by aloraine, Mon Dec 10 19:58:13 2018 UTC revision 140 by aloraine, Fri Jan 1 18:12:10 2021 UTC
# Line 1  Line 1 
1    A_gambiae_Oct_2006      Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3)
2  A_gambiae_Feb_2003      Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2)  A_gambiae_Feb_2003      Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2)
3  A_lyrata_Apr_2011       Arabidopsis lyrata JGI v1.0 assembly  A_lyrata_Apr_2011       Arabidopsis lyrata JGI v1.0 assembly
4  A_melanoleuca_Dec_2009  Ailuropoda melanoleuca (Dec 2009) giant panda (ailMel1/BGI-Shenzhen AilMel 1.0)  A_melanoleuca_Dec_2009  Ailuropoda melanoleuca (Dec 2009) giant panda (ailMel1/BGI-Shenzhen AilMel 1.0)
5  A_mellifera_Jan_2005    Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 )  A_mellifera_Jan_2005    Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 )
6    A_rostrata_Oct_2016     Anguilla rostrata (Oct 2016) American eel (LTYT01/Dryad)
7  A_thaliana_Jun_2009     Arabidopsis thaliana TAIR9  A_thaliana_Jun_2009     Arabidopsis thaliana TAIR9
8  A_thaliana_Apr_2008     Arabidopsis thaliana TAIR8  A_thaliana_Apr_2008     Arabidopsis thaliana TAIR8
9  A_thaliana_Jan_2004     Arabidopsis thaliana  A_thaliana_Jan_2004     Arabidopsis thaliana
10  B_distachyon_Aug_2010   Brachypodium distachyon JGI v1.0 8x assembly  B_distachyon_Aug_2010   Brachypodium distachyon JGI v1.0 8x assembly
11  B_taurus_Oct_2011       Bos taurus (Jun 2014) cow (UMD_3.1.1/bosTau8)  B_taurus_Jun_2014       Bos taurus (Jun 2014) cow (UMD_3.1.1/bosTau8)
12  B_taurus_Oct_2011       Bos taurus (Oct 2011) cow (Baylor Btau_4.6.1/bosTau7)  B_taurus_Oct_2011       Bos taurus (Oct 2011) cow (Baylor Btau_4.6.1/bosTau7)
13    C_albicans_SC5314_Jun_2014      Candida albicans SC5314 Assembly 22
14  C_albicans_SC5314_Nov_2008      Candida albicans SC5314 Assembly 21  C_albicans_SC5314_Nov_2008      Candida albicans SC5314 Assembly 21
15    C_albicans_WO-1_Dec_2013        Candida albicans WO-1 Dec 2013
16  C_albicans_WO-1_Jul_2010        Candida albicans WO-1  C_albicans_WO-1_Jul_2010        Candida albicans WO-1
17    C_elegans_Feb_2013      C. elegans Feb 2013 (WBcel235/ce11)
18  C_elegans_May_2008      C. elegans May 2008 (WS190/ce6)  C_elegans_May_2008      C. elegans May 2008 (WS190/ce6)
19  C_elegans_Oct_2010      C. elegans Oct 2010 (WS220/ce10)  C_elegans_Oct_2010      C. elegans Oct 2010 (WS220/ce10)
20  C_papaya_Aug_2010       Carica papaya  C_papaya_Aug_2010       Carica papaya
21  C_porcellus_Feb_2008    Cavia porcellus (Feb 2008) guinea pig (cavPor3)  C_porcellus_Feb_2008    Cavia porcellus (Feb 2008) guinea pig (cavPor3)
22  C_reinhardtii_Nov_2010  Chlamydomonas reinhardtii JGI v4 assembly  C_reinhardtii_Nov_2010  Chlamydomonas reinhardtii JGI v4 assembly
23    C_sabaeus_Mar_2014      Chlorocebus sabaeus (Mar 2014) green monkey (Chlorocebus_sabeus 1.1/chlSab2)
24  C_sativa_DH55_Apr_2014  Camelina sativa (false flax) April 2014  C_sativa_DH55_Apr_2014  Camelina sativa (false flax) April 2014
25    C_sativa_CBDRx_Dec_2018 Cannabis sativa CBDRx Dec 2018
26  D_discoideum_Ax4_May_2009       Dictyostelim discoideum (slime mold) May 2009  D_discoideum_Ax4_May_2009       Dictyostelim discoideum (slime mold) May 2009
27    D_magna_Apr_2010        Daphnia magna Xinb3 v2.4
28    D_magna_Jan_2019        Daphnia magna SK v1.0
29  D_melanogaster_Jul_2014 Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06)  D_melanogaster_Jul_2014 Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06)
30  D_melanogaster_Apr_2006 Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5)  D_melanogaster_Apr_2006 Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5)
31  D_rerio_Jul_2010        Danio rerio (Jul 2010) zebrafish (danRer7/Zv9)  D_pulex_Feb_2011        Daphnia pulex TCO v1.0
32    D_pulex_Sep_2016        Daphnia pulex PA42 v3.0
33    D_rerio_May_2017        Danio rerio (May 2017) zebrafish (GRCz11/danRer11)
34    D_rerio_Jul_2010        Danio rerio (Jul 2010) zebrafish (Zv9/danRer7)
35  E_caballus_Sep_2007     Equus caballus (Sep 2007) horse (equCab2)  E_caballus_Sep_2007     Equus caballus (Sep 2007) horse (equCab2)
36  E_coli_K12-MG1655_Jan_2012      Escherichia coli K12-MG1655  E_coli_K12-MG1655_Jan_2012      Escherichia coli K12-MG1655
37  F_catus_Sep_2011        Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5)  F_catus_Sep_2011        Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5)
# Line 45  O_sativa_japonica_Jun_2009     Oryza sativa Line 57  O_sativa_japonica_Jun_2009     Oryza sativa
57  O_sativa_japonica_Oct_2011      Oryza sativa japonica variety Os-Nipponbare-Reference-IRGSP-1.0  O_sativa_japonica_Oct_2011      Oryza sativa japonica variety Os-Nipponbare-Reference-IRGSP-1.0
58  O_aries_Feb_2010        Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1)  O_aries_Feb_2010        Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1)
59  P_patens_Jan_2008       Physcomitrella patens Jan 2008  P_patens_Jan_2008       Physcomitrella patens Jan 2008
60    P_patens_Jan_2018       Physcomitrella patens (Jan 2018) v3.3
61  P_persica_Apr_2010      Prunus persica v1  P_persica_Apr_2010      Prunus persica v1
62  P_trichocarpa_Jan_2010  Populus trichocarpa v2  P_trichocarpa_Jan_2010  Populus trichocarpa v2
63  P_trichocarpa_Aug_2012  Populus trichocarpa v3  P_trichocarpa_Aug_2012  Populus trichocarpa v3
# Line 59  S_cerevisiae_Jun_2008  S. cerevisiae stra Line 72  S_cerevisiae_Jun_2008  S. cerevisiae stra
72  S_lycopersicum_May_2012 Solanum lycopersicum (May 2012) tomato (SL2.40)  S_lycopersicum_May_2012 Solanum lycopersicum (May 2012) tomato (SL2.40)
73  S_lycopersicum_Feb_2014 Solanum lycopersicum (Feb 2014) tomato (SL2.50)  S_lycopersicum_Feb_2014 Solanum lycopersicum (Feb 2014) tomato (SL2.50)
74  S_lycopersicum_Feb_2017 Solanum lycopersicum (Feb 2017) tomato (SL3.0)  S_lycopersicum_Feb_2017 Solanum lycopersicum (Feb 2017) tomato (SL3.0)
75    S_lycopersicum_Sep_2019 Solanum lycopersicum (Sep 2019) tomato (SL4.0)
76  S_pombe_May_2012        S. pombe (May 2012) fission yeast  S_pombe_May_2012        S. pombe (May 2012) fission yeast
77  S_tuberosum_DM_Jul_2011 Solanum tuberosum Group Phureja clone DM1-3 (potato) v4.03  S_tuberosum_DM_Jul_2011 Solanum tuberosum Group Phureja clone DM1-3 (potato) v4.03
78  T_castaneum_Mar_2008    Tribolium castaneum (March 2008) red flour beetle  T_castaneum_Mar_2008    Tribolium castaneum (March 2008) red flour beetle
79  T_kodakaraensis_KOD1_May_2004   Thermococcus kodakaraensis May 2004  T_kodakaraensis_KOD1_May_2004   Thermococcus kodakaraensis May 2004
80  T_parvula_May_2012      Thellungiella parvula (salt cress) v2, May 2012  T_parvula_May_2012      Thellungiella parvula (salt cress) v2, May 2012
81  T_rubripes_Oct_2011     Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3)  T_rubripes_Oct_2011     Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3)
82    T_aestivum_Aug_2018     Triticum aestivum (IWGSC v1)
83  V_carteri_Jul_2010      Volvox carteri f. nagariensis, Eve Jul 2010  V_carteri_Jul_2010      Volvox carteri f. nagariensis, Eve Jul 2010
84  V_vinifera_Mar_2010     12X March 2010 wine grape draft genome Vitis vinifera  V_vinifera_Mar_2010     12X March 2010 wine grape draft genome Vitis vinifera
85  X_tropicalis_Nov_2009   JGI4.2/xenTro3 Xenopus tropicalis genome, Nov 2009  X_tropicalis_Nov_2009   JGI4.2/xenTro3 Xenopus tropicalis genome, Nov 2009
86    X_tropicalis_Jul_2016   JGI9.1/xenTro9 Xenopus tropicalis genome, Jul 2016
87  Y_lipolytica_CLIB122_Jul_2004   Yarrowia lipolytica CLIB122 (Jul 2004) Assembly GCA_000002525.2  Y_lipolytica_CLIB122_Jul_2004   Yarrowia lipolytica CLIB122 (Jul 2004) Assembly GCA_000002525.2
88  Y_lipolytica_PO1f_May_2014      Yarrowia lipolytica PO1f (May 2014) Assembly GCA_000590845.2  Y_lipolytica_PO1f_May_2014      Yarrowia lipolytica PO1f (May 2014) Assembly GCA_000590845.2
89  Y_lipolytica_WSH-Z06_Mar_2014   Yarrowia lipolytica WSH-Z06 (Mar 2014) Assembly GCA_000613155.1  Y_lipolytica_WSH-Z06_Mar_2014   Yarrowia lipolytica WSH-Z06 (Mar 2014) Assembly GCA_000613155.1
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