/[genomes]/quickload/contents.txt
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revision 181 by aloraine, Wed Apr 3 19:37:19 2024 UTC revision 233 by aloraine, Fri Jan 30 01:34:13 2026 UTC
# Line 1  Line 1 
1    A_albopictus_Jan_2024   Aedes albopictus (Jan 2024) Asian tiger mosquito (AalbF5)
2  A_gambiae_Oct_2006      Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3)  A_gambiae_Oct_2006      Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3)
3  A_gambiae_Feb_2003      Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2)  A_gambiae_Feb_2003      Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2)
4  A_lyrata_Apr_2011       Arabidopsis lyrata JGI v1.0 assembly  A_lyrata_Apr_2011       Arabidopsis lyrata JGI v1.0 assembly
# Line 23  C_reinhardtii_Nov_2010 Chlamydomonas rei Line 24  C_reinhardtii_Nov_2010 Chlamydomonas rei
24  C_sabaeus_Mar_2014      Chlorocebus sabaeus (Mar 2014) green monkey (Chlorocebus_sabeus 1.1/chlSab2)  C_sabaeus_Mar_2014      Chlorocebus sabaeus (Mar 2014) green monkey (Chlorocebus_sabeus 1.1/chlSab2)
25  C_sativa_DH55_Apr_2014  Camelina sativa (false flax) April 2014  C_sativa_DH55_Apr_2014  Camelina sativa (false flax) April 2014
26  C_sativa_CBDRx_Dec_2018 Cannabis sativa CBDRx Dec 2018  C_sativa_CBDRx_Dec_2018 Cannabis sativa CBDRx Dec 2018
27    C_teleta_Jan_2013       Capitella teleta Jan 2013 (Capca1)
28    D_dama_Nov_2023 Dama dama (Nov 2023) fallow deer (ASM3311817v1)
29  D_discoideum_Ax4_May_2009       Dictyostelim discoideum (slime mold) May 2009  D_discoideum_Ax4_May_2009       Dictyostelim discoideum (slime mold) May 2009
30  D_magna_Apr_2010        Daphnia magna Xinb3 v2.4  D_magna_Apr_2010        Daphnia magna Xinb3 v2.4
31  D_magna_Jan_2019        Daphnia magna SK v1.0  D_magna_Jan_2019        Daphnia magna SK v1.0
# Line 35  D_rerio_May_2017       Danio rerio (May 2017) Line 38  D_rerio_May_2017       Danio rerio (May 2017)
38  D_rerio_Jul_2010        Danio rerio (Jul 2010) zebrafish (Zv9/danRer7)  D_rerio_Jul_2010        Danio rerio (Jul 2010) zebrafish (Zv9/danRer7)
39  E_caballus_Sep_2007     Equus caballus (Sep 2007) horse (equCab2)  E_caballus_Sep_2007     Equus caballus (Sep 2007) horse (equCab2)
40  E_coli_K12-MG1655_Jan_2012      Escherichia coli K12-MG1655  E_coli_K12-MG1655_Jan_2012      Escherichia coli K12-MG1655
41    E_lathyris_Nov_2023     Euphorbia lathyris (Nov 2023) caper spurge (ddEupLath1.1)
42  F_albicollis_Jun_2013   Ficedula albicollis Jun 2013 (FicAlb1.5)  F_albicollis_Jun_2013   Ficedula albicollis Jun 2013 (FicAlb1.5)
43  F_catus_Sep_2011        Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5)  F_catus_Sep_2011        Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5)
44  F_vesca_Sep_2011        Fragaria vesca (woodland strawberry) v1.  F_vesca_Sep_2011        Fragaria vesca (woodland strawberry) v1.
# Line 43  H_sapiens_Dec_2013     Homo sapiens (Dec 201 Line 47  H_sapiens_Dec_2013     Homo sapiens (Dec 201
47  H_sapiens_Feb_2009      Homo sapiens (Feb 2009) human being (GRCh37/hg19)  H_sapiens_Feb_2009      Homo sapiens (Feb 2009) human being (GRCh37/hg19)
48  H_sapiens_Mar_2006      Homo sapiens (Mar 2006) human being (NCBI36/hg18)  H_sapiens_Mar_2006      Homo sapiens (Mar 2006) human being (NCBI36/hg18)
49  H_sapiens_May_2004      Homo sapiens (May 2004) human being (NCBI35/hg17)  H_sapiens_May_2004      Homo sapiens (May 2004) human being (NCBI35/hg17)
50    H_vulgaris_Apr_2024     Hydra vulgaris (Apr 2024) Swiftwater hydra (HydraT2T_AEP)
51  G_gallus_Nov_2011       Gallus gallus (Nov 2011) chicken (galGal4/ICGC Gallus-gallus-4.0)  G_gallus_Nov_2011       Gallus gallus (Nov 2011) chicken (galGal4/ICGC Gallus-gallus-4.0)
52  G_max_Aug_2010  Glycine max Glyma1  G_max_Aug_2010  Glycine max Glyma1
53  G_max_Jan_2014  Glycine max Gmax_275_v2.0  G_max_Jan_2014  Glycine max Gmax_275_v2.0
# Line 57  M_musculus_Feb_2006    Mus musculus (Feb 20 Line 62  M_musculus_Feb_2006    Mus musculus (Feb 20
62  M_musculus_Aug_2005     Mus musculus (Aug 2005) mouse (NCBI35/mm7)  M_musculus_Aug_2005     Mus musculus (Aug 2005) mouse (NCBI35/mm7)
63  M_truncatula_Mar_2009   Medicago truncatula Mt3.0 release  M_truncatula_Mar_2009   Medicago truncatula Mt3.0 release
64  N_vectensis_Jun_2007    Nematostella vectensis, starlet sea anemone  N_vectensis_Jun_2007    Nematostella vectensis, starlet sea anemone
65    O_latipes_Jul_2017      Oryzias latipes (Jul 2017) Japanese rice fish (Medaka) (ASM223467v1)
66  O_sativa_japonica_Jun_2009      Oryza sativa japonica June 2009  O_sativa_japonica_Jun_2009      Oryza sativa japonica June 2009
67  O_sativa_japonica_Oct_2011      Oryza sativa japonica variety Os-Nipponbare-Reference-IRGSP-1.0  O_sativa_japonica_Oct_2011      Oryza sativa japonica variety Os-Nipponbare-Reference-IRGSP-1.0
68  O_aries_Feb_2010        Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1)  O_aries_Feb_2010        Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1)
# Line 70  R_communis_May_2008    Ricinis communis TIG Line 76  R_communis_May_2008    Ricinis communis TIG
76  R_norvegicus_Nov_2020   Rattus norvegicus (Nov 2020) rat (mRatBN7.2/rn7)  R_norvegicus_Nov_2020   Rattus norvegicus (Nov 2020) rat (mRatBN7.2/rn7)
77  R_norvegicus_Jul_2014   Rattus norvegicus (Jul 2014) rat (RGSC 6.0/rn6)  R_norvegicus_Jul_2014   Rattus norvegicus (Jul 2014) rat (RGSC 6.0/rn6)
78  R_norvegicus_Mar_2012   Rattus norvegicus (Mar 2012) rat (RGSC 5.0/rn5)  R_norvegicus_Mar_2012   Rattus norvegicus (Mar 2012) rat (RGSC 5.0/rn5)
79    R_varieornatus_YOKOZUNA-1_Nov_2016      Ramazzottius varieornatus strain YOKOZUNA-1 (Nov 2016) water bear (Rvar_4.0)
80  S_bicolor_Jan_2009      Sorghum bicolor v1.0  S_bicolor_Jan_2009      Sorghum bicolor v1.0
81  S_bicolor_Jun_2013      Sorghum bicolor v2.0 (June 2013)  S_bicolor_Jun_2013      Sorghum bicolor v2.0 (June 2013)
82  S_cerevisiae_Apr_2011   S. cerevisiae strain S288C (Apr 2011) budding yeast (sacCer3)  S_cerevisiae_Apr_2011   S. cerevisiae strain S288C (Apr 2011) budding yeast (sacCer3)
83  S_cerevisiae_Jun_2008   S. cerevisiae strain S288C (Jun 2008) budding yeast (sacCer2)  S_cerevisiae_Jun_2008   S. cerevisiae strain S288C (Jun 2008) budding yeast (sacCer2)
84    S_chinensis_Apr_2019    Simmondsia chinensis (Apr 2019) jojoba (sc1)
85  S_lycopersicum_May_2012 Solanum lycopersicum (May 2012) tomato (SL2.40)  S_lycopersicum_May_2012 Solanum lycopersicum (May 2012) tomato (SL2.40)
86  S_lycopersicum_Feb_2014 Solanum lycopersicum (Feb 2014) tomato (SL2.50)  S_lycopersicum_Feb_2014 Solanum lycopersicum (Feb 2014) tomato (SL2.50)
87  S_lycopersicum_Feb_2017 Solanum lycopersicum (Feb 2017) tomato (SL3.0)  S_lycopersicum_Feb_2017 Solanum lycopersicum (Feb 2017) tomato (SL3.0)
# Line 86  T_kodakaraensis_KOD1_May_2004  Thermococc Line 94  T_kodakaraensis_KOD1_May_2004  Thermococc
94  T_parvula_May_2012      Thellungiella parvula (salt cress) v2, May 2012  T_parvula_May_2012      Thellungiella parvula (salt cress) v2, May 2012
95  T_rubripes_Oct_2011     Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3)  T_rubripes_Oct_2011     Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3)
96  T_aestivum_Aug_2018     Triticum aestivum (IWGSC v1)  T_aestivum_Aug_2018     Triticum aestivum (IWGSC v1)
97    V_cardui_Feb_2021       Vanessa cardui (Feb 2021) painted lady (ilVanCard2.1)
98  V_carteri_Jul_2010      Volvox carteri f. nagariensis, Eve Jul 2010  V_carteri_Jul_2010      Volvox carteri f. nagariensis, Eve Jul 2010
99  V_vinifera_Mar_2010     12X March 2010 wine grape draft genome Vitis vinifera  V_vinifera_Mar_2010     12X March 2010 wine grape draft genome Vitis vinifera
100  X_tropicalis_Nov_2009   JGI4.2/xenTro3 Xenopus tropicalis genome, Nov 2009  X_tropicalis_Nov_2009   JGI4.2/xenTro3 Xenopus tropicalis genome, Nov 2009
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