/[genomes]/quickload/contents.txt
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Contents of /quickload/contents.txt

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Revision 88 - (show annotations)
Tue Jan 15 22:11:30 2019 UTC (7 months, 1 week ago) by aloraine
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Add description for new genome versions ce11, chlSab2, C. albicans
1 A_gambiae_Feb_2003 Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2)
2 A_lyrata_Apr_2011 Arabidopsis lyrata JGI v1.0 assembly
3 A_melanoleuca_Dec_2009 Ailuropoda melanoleuca (Dec 2009) giant panda (ailMel1/BGI-Shenzhen AilMel 1.0)
4 A_mellifera_Jan_2005 Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 )
5 A_thaliana_Jun_2009 Arabidopsis thaliana TAIR9
6 A_thaliana_Apr_2008 Arabidopsis thaliana TAIR8
7 A_thaliana_Jan_2004 Arabidopsis thaliana
8 B_distachyon_Aug_2010 Brachypodium distachyon JGI v1.0 8x assembly
9 B_taurus_Jun_2014 Bos taurus (Jun 2014) cow (UMD_3.1.1/bosTau8)
10 B_taurus_Oct_2011 Bos taurus (Oct 2011) cow (Baylor Btau_4.6.1/bosTau7)
11 C_albicans_SC5314_Jun_2014 Candida albicans SC5314 Assembly 22
12 C_albicans_SC5314_Nov_2008 Candida albicans SC5314 Assembly 21
13 C_albicans_WO-1_Dec_2013 Candida albicans WO-1
14 C_albicans_WO-1_Jul_2010 Candida albicans WO-1
15 C_elegans_Feb_2013 C. elegans Feb 2013 (WBcel235/ce11)
16 C_elegans_May_2008 C. elegans May 2008 (WS190/ce6)
17 C_elegans_Oct_2010 C. elegans Oct 2010 (WS220/ce10)
18 C_papaya_Aug_2010 Carica papaya
19 C_porcellus_Feb_2008 Cavia porcellus (Feb 2008) guinea pig (cavPor3)
20 C_reinhardtii_Nov_2010 Chlamydomonas reinhardtii JGI v4 assembly
21 C_sabeus_Mar_2014 Chlorocebus sabeus Mar 2014 (Chlorocebus_sabeus 1.1/chlSab2)
22 C_sativa_DH55_Apr_2014 Camelina sativa (false flax) April 2014
23 D_discoideum_Ax4_May_2009 Dictyostelim discoideum (slime mold) May 2009
24 D_melanogaster_Jul_2014 Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06)
25 D_melanogaster_Apr_2006 Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5)
26 D_rerio_May_2017 Danio rerio (May 2017) zebrafish (GRCz11/danRer11)
27 D_rerio_Jul_2010 Danio rerio (Jul 2010) zebrafish (Zv9/danRer7)
28 E_caballus_Sep_2007 Equus caballus (Sep 2007) horse (equCab2)
29 E_coli_K12-MG1655_Jan_2012 Escherichia coli K12-MG1655
30 F_catus_Sep_2011 Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5)
31 F_vesca_Sep_2011 Fragaria vesca (woodland strawberry) v1.
32 H_sapiens_Dec_2013 Homo sapiens (Dec 2013) human being (GRCh38/hg38)
33 H_sapiens_Feb_2009 Homo sapiens (Feb 2009) human being (GRCh37/hg19)
34 H_sapiens_Mar_2006 Homo sapiens (Mar 2006) human being (NCBI36/hg18)
35 H_sapiens_May_2004 Homo sapiens (May 2004) human being (NCBI35/hg17)
36 G_gallus_Nov_2011 Gallus gallus (Nov 2011) chicken (galGal4/ICGC Gallus-gallus-4.0)
37 G_max_Aug_2010 Glycine max Glyma1
38 G_max_Jan_2014 Glycine max Gmax_275_v2.0
39 L_africana_Jul_2009 Loxodonta africana (Jul 2009) elephant (loxAfr3)
40 L_passim_Apr_2014 Lotmaria passim, strain SF, Crithidia mellificae strain SF, whole genome shotgun sequencing project
41 M_acuminata_DH_Pahang_Jan_2016 Musa acuminata DH Pahang (Jan 2016) banana (v2)
42 M_domestica_Borkh_Jun_2017 Malus domestica Borkh (GDDH13 Version 1.1) apple
43 M_musculus_Dec_2011 Mus musculus (Dec 2011) mouse (GRCm38/mm10)
44 M_musculus_Jul_2007 Mus musculus (Jul 2007) mouse (NCBI37/mm9)
45 M_musculus_Feb_2006 Mus musculus (Feb 2006) mouse (NCBI36/mm8)
46 M_musculus_Aug_2005 Mus musculus (Aug 2005) mouse (NCBI35/mm7)
47 M_truncatula_Mar_2009 Medicago truncatula Mt3.0 release
48 N_vectensis_Jun_2007 Nematostella vectensis, starlet sea anemone
49 O_sativa_japonica_Jun_2009 Oryza sativa japonica June 2009
50 O_sativa_japonica_Oct_2011 Oryza sativa japonica variety Os-Nipponbare-Reference-IRGSP-1.0
51 O_aries_Feb_2010 Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1)
52 P_patens_Jan_2008 Physcomitrella patens Jan 2008
53 P_persica_Apr_2010 Prunus persica v1
54 P_trichocarpa_Jan_2010 Populus trichocarpa v2
55 P_trichocarpa_Aug_2012 Populus trichocarpa v3
56 P_troglodytes_Oct_2010 Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3)
57 R_communis_May_2008 Ricinis communis TIGR/JCVI v0.1 assembly, castor bean
58 R_norvegicus_Jul_2014 Rattus norvegicus (Jul 2014) rat (RGSC 6.0/rn6)
59 R_norvegicus_Mar_2012 Rattus norvegicus (Mar 2012) rat (RGSC 5.0/rn5)
60 S_bicolor_Jan_2009 Sorghum bicolor v1.0
61 S_bicolor_Jun_2013 Sorghum bicolor v2.0 (June 2013)
62 S_cerevisiae_Apr_2011 S. cerevisiae strain S288C (Apr 2011) budding yeast (sacCer3)
63 S_cerevisiae_Jun_2008 S. cerevisiae strain S288C (Jun 2008) budding yeast (sacCer2)
64 S_lycopersicum_May_2012 Solanum lycopersicum (May 2012) tomato (SL2.40)
65 S_lycopersicum_Feb_2014 Solanum lycopersicum (Feb 2014) tomato (SL2.50)
66 S_lycopersicum_Feb_2017 Solanum lycopersicum (Feb 2017) tomato (SL3.0)
67 S_pombe_May_2012 S. pombe (May 2012) fission yeast
68 S_tuberosum_DM_Jul_2011 Solanum tuberosum Group Phureja clone DM1-3 (potato) v4.03
69 T_castaneum_Mar_2008 Tribolium castaneum (March 2008) red flour beetle
70 T_kodakaraensis_KOD1_May_2004 Thermococcus kodakaraensis May 2004
71 T_parvula_May_2012 Thellungiella parvula (salt cress) v2, May 2012
72 T_rubripes_Oct_2011 Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3)
73 V_carteri_Jul_2010 Volvox carteri f. nagariensis, Eve Jul 2010
74 V_vinifera_Mar_2010 12X March 2010 wine grape draft genome Vitis vinifera
75 X_tropicalis_Nov_2009 JGI4.2/xenTro3 Xenopus tropicalis genome, Nov 2009
76 Y_lipolytica_CLIB122_Jul_2004 Yarrowia lipolytica CLIB122 (Jul 2004) Assembly GCA_000002525.2
77 Y_lipolytica_PO1f_May_2014 Yarrowia lipolytica PO1f (May 2014) Assembly GCA_000590845.2
78 Y_lipolytica_WSH-Z06_Mar_2014 Yarrowia lipolytica WSH-Z06 (Mar 2014) Assembly GCA_000613155.1
79 Z_mays_B73_Mar_2010 Zea Mays B73 RefGenv2

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