/[genomes]/quickload/contents.txt
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revision 68 by aloraine, Wed Oct 3 15:02:04 2018 UTC revision 106 by aloraine, Tue Sep 10 20:25:45 2019 UTC
# Line 1  Line 1 
1    A_gambiae_Oct_2006      Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3)
2  A_gambiae_Feb_2003      Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2)  A_gambiae_Feb_2003      Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2)
3  A_lyrata_Apr_2011       Arabidopsis lyrata JGI v1.0 assembly  A_lyrata_Apr_2011       Arabidopsis lyrata JGI v1.0 assembly
4  A_melanoleuca_Dec_2009  Ailuropoda melanoleuca (Dec 2009) giant panda (ailMel1/BGI-Shenzhen AilMel 1.0)  A_melanoleuca_Dec_2009  Ailuropoda melanoleuca (Dec 2009) giant panda (ailMel1/BGI-Shenzhen AilMel 1.0)
5  A_mellifera_Jan_2005    Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 )  A_mellifera_Jan_2005    Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 )
6    A_rostrata_Oct_2016     Anguilla rostrata (Oct 2016) American eel (LTYT01/Dryad)
7  A_thaliana_Jun_2009     Arabidopsis thaliana TAIR9  A_thaliana_Jun_2009     Arabidopsis thaliana TAIR9
8  A_thaliana_Apr_2008     Arabidopsis thaliana TAIR8  A_thaliana_Apr_2008     Arabidopsis thaliana TAIR8
9  A_thaliana_Jan_2004     Arabidopsis thaliana  A_thaliana_Jan_2004     Arabidopsis thaliana
10  B_distachyon_Aug_2010   Brachypodium distachyon JGI v1.0 8x assembly  B_distachyon_Aug_2010   Brachypodium distachyon JGI v1.0 8x assembly
11    B_taurus_Jun_2014       Bos taurus (Jun 2014) cow (UMD_3.1.1/bosTau8)
12  B_taurus_Oct_2011       Bos taurus (Oct 2011) cow (Baylor Btau_4.6.1/bosTau7)  B_taurus_Oct_2011       Bos taurus (Oct 2011) cow (Baylor Btau_4.6.1/bosTau7)
13    C_albicans_SC5314_Jun_2014      Candida albicans SC5314 Assembly 22
14  C_albicans_SC5314_Nov_2008      Candida albicans SC5314 Assembly 21  C_albicans_SC5314_Nov_2008      Candida albicans SC5314 Assembly 21
15    C_albicans_WO-1_Dec_2013        Candida albicans WO-1 Dec 2013
16  C_albicans_WO-1_Jul_2010        Candida albicans WO-1  C_albicans_WO-1_Jul_2010        Candida albicans WO-1
17    C_elegans_Feb_2013      C. elegans Feb 2013 (WBcel235/ce11)
18  C_elegans_May_2008      C. elegans May 2008 (WS190/ce6)  C_elegans_May_2008      C. elegans May 2008 (WS190/ce6)
19  C_elegans_Oct_2010      C. elegans Oct 2010 (WS220/ce10)  C_elegans_Oct_2010      C. elegans Oct 2010 (WS220/ce10)
20  C_papaya_Aug_2010       Carica papaya  C_papaya_Aug_2010       Carica papaya
21  C_porcellus_Feb_2008    Cavia porcellus (Feb 2008) guinea pig (cavPor3)  C_porcellus_Feb_2008    Cavia porcellus (Feb 2008) guinea pig (cavPor3)
22  C_reinhardtii_Nov_2010  Chlamydomonas reinhardtii JGI v4 assembly  C_reinhardtii_Nov_2010  Chlamydomonas reinhardtii JGI v4 assembly
23    C_sabaeus_Mar_2014      Chlorocebus sabaeus (Mar 2014) green monkey (Chlorocebus_sabeus 1.1/chlSab2)
24  C_sativa_DH55_Apr_2014  Camelina sativa (false flax) April 2014  C_sativa_DH55_Apr_2014  Camelina sativa (false flax) April 2014
25  D_discoideum_Ax4_May_2009       Dictyostelim discoideum (slime mold) May 2009  D_discoideum_Ax4_May_2009       Dictyostelim discoideum (slime mold) May 2009
26    D_magna_Apr_2010        Daphnia magna Xinb3 v2.4
27    D_magna_Jan_2019        Daphnia magna SK v1.0
28  D_melanogaster_Jul_2014 Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06)  D_melanogaster_Jul_2014 Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06)
29  D_melanogaster_Apr_2006 Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5)  D_melanogaster_Apr_2006 Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5)
30  D_rerio_Jul_2010        Danio rerio (Jul 2010) zebrafish (danRer7/Zv9)  D_pulex_Feb_2011        Daphnia pulex TCO v1.0
31    D_pulex_Sep_2016        Daphnia pulex PA42 v3.0
32    D_rerio_May_2017        Danio rerio (May 2017) zebrafish (GRCz11/danRer11)
33    D_rerio_Jul_2010        Danio rerio (Jul 2010) zebrafish (Zv9/danRer7)
34  E_caballus_Sep_2007     Equus caballus (Sep 2007) horse (equCab2)  E_caballus_Sep_2007     Equus caballus (Sep 2007) horse (equCab2)
35  E_coli_K12-MG1655_Jan_2012      Escherichia coli K12-MG1655  E_coli_K12-MG1655_Jan_2012      Escherichia coli K12-MG1655
36  F_catus_Sep_2011        Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5)  F_catus_Sep_2011        Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5)
# Line 37  M_domestica_Borkh_Jun_2017     Malus domesti Line 49  M_domestica_Borkh_Jun_2017     Malus domesti
49  M_musculus_Dec_2011     Mus musculus (Dec 2011) mouse (GRCm38/mm10)  M_musculus_Dec_2011     Mus musculus (Dec 2011) mouse (GRCm38/mm10)
50  M_musculus_Jul_2007     Mus musculus (Jul 2007) mouse (NCBI37/mm9)  M_musculus_Jul_2007     Mus musculus (Jul 2007) mouse (NCBI37/mm9)
51  M_musculus_Feb_2006     Mus musculus (Feb 2006) mouse (NCBI36/mm8)  M_musculus_Feb_2006     Mus musculus (Feb 2006) mouse (NCBI36/mm8)
52    M_musculus_Aug_2005     Mus musculus (Aug 2005) mouse (NCBI35/mm7)
53  M_truncatula_Mar_2009   Medicago truncatula Mt3.0 release  M_truncatula_Mar_2009   Medicago truncatula Mt3.0 release
54  N_vectensis_Jun_2007    Nematostella vectensis, starlet sea anemone  N_vectensis_Jun_2007    Nematostella vectensis, starlet sea anemone
55  O_sativa_japonica_Jun_2009      Oryza sativa japonica June 2009  O_sativa_japonica_Jun_2009      Oryza sativa japonica June 2009
# Line 48  P_trichocarpa_Jan_2010 Populus trichocar Line 61  P_trichocarpa_Jan_2010 Populus trichocar
61  P_trichocarpa_Aug_2012  Populus trichocarpa v3  P_trichocarpa_Aug_2012  Populus trichocarpa v3
62  P_troglodytes_Oct_2010  Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3)  P_troglodytes_Oct_2010  Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3)
63  R_communis_May_2008     Ricinis communis TIGR/JCVI v0.1 assembly, castor bean  R_communis_May_2008     Ricinis communis TIGR/JCVI v0.1 assembly, castor bean
64  R_norvegicus_Mar_2012   Rattus Norvegicus (Mar 2012) rat (RGSC 5.0/rn5)  R_norvegicus_Jul_2014   Rattus norvegicus (Jul 2014) rat (RGSC 6.0/rn6)
65    R_norvegicus_Mar_2012   Rattus norvegicus (Mar 2012) rat (RGSC 5.0/rn5)
66  S_bicolor_Jan_2009      Sorghum bicolor v1.0  S_bicolor_Jan_2009      Sorghum bicolor v1.0
67  S_bicolor_Jun_2013      Sorghum bicolor v2.0 (June 2013)  S_bicolor_Jun_2013      Sorghum bicolor v2.0 (June 2013)
68  S_cerevisiae_Apr_2011   S. cerevisiae strain S288C (Apr 2011) budding yeast (sacCer3)  S_cerevisiae_Apr_2011   S. cerevisiae strain S288C (Apr 2011) budding yeast (sacCer3)
# Line 57  S_lycopersicum_May_2012        Solanum lycopers Line 71  S_lycopersicum_May_2012        Solanum lycopers
71  S_lycopersicum_Feb_2014 Solanum lycopersicum (Feb 2014) tomato (SL2.50)  S_lycopersicum_Feb_2014 Solanum lycopersicum (Feb 2014) tomato (SL2.50)
72  S_lycopersicum_Feb_2017 Solanum lycopersicum (Feb 2017) tomato (SL3.0)  S_lycopersicum_Feb_2017 Solanum lycopersicum (Feb 2017) tomato (SL3.0)
73  S_pombe_May_2012        S. pombe (May 2012) fission yeast  S_pombe_May_2012        S. pombe (May 2012) fission yeast
74  S_tuberosum_DM_Jan_2016 Solanum tuberosum Group Phureja clone DM1-3 (potato) v4.04  S_tuberosum_DM_Jul_2011 Solanum tuberosum Group Phureja clone DM1-3 (potato) v4.03
75  T_castaneum_Mar_2008    Tribolium castaneum (March 2008) red flour beetle  T_castaneum_Mar_2008    Tribolium castaneum (March 2008) red flour beetle
76  T_kodakaraensis_KOD1_May_2004   Thermococcus kodakaraensis May 2004  T_kodakaraensis_KOD1_May_2004   Thermococcus kodakaraensis May 2004
77  T_parvula_May_2012      Thellungiella parvula (salt cress) v2, May 2012  T_parvula_May_2012      Thellungiella parvula (salt cress) v2, May 2012
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