/[genomes]/quickload/contents.txt
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revision 7 by aloraine, Wed Sep 26 21:51:10 2018 UTC revision 88 by aloraine, Tue Jan 15 22:11:30 2019 UTC
# Line 5  A_mellifera_Jan_2005   Apis mellifera (hon Line 5  A_mellifera_Jan_2005   Apis mellifera (hon
5  A_thaliana_Jun_2009     Arabidopsis thaliana TAIR9  A_thaliana_Jun_2009     Arabidopsis thaliana TAIR9
6  A_thaliana_Apr_2008     Arabidopsis thaliana TAIR8  A_thaliana_Apr_2008     Arabidopsis thaliana TAIR8
7  A_thaliana_Jan_2004     Arabidopsis thaliana  A_thaliana_Jan_2004     Arabidopsis thaliana
 D_discoideum_Ax4_May_2009       Dictyostelim discoideum (slime mold) May 2009  
8  B_distachyon_Aug_2010   Brachypodium distachyon JGI v1.0 8x assembly  B_distachyon_Aug_2010   Brachypodium distachyon JGI v1.0 8x assembly
9    B_taurus_Jun_2014       Bos taurus (Jun 2014) cow (UMD_3.1.1/bosTau8)
10  B_taurus_Oct_2011       Bos taurus (Oct 2011) cow (Baylor Btau_4.6.1/bosTau7)  B_taurus_Oct_2011       Bos taurus (Oct 2011) cow (Baylor Btau_4.6.1/bosTau7)
11    C_albicans_SC5314_Jun_2014      Candida albicans SC5314 Assembly 22
12  C_albicans_SC5314_Nov_2008      Candida albicans SC5314 Assembly 21  C_albicans_SC5314_Nov_2008      Candida albicans SC5314 Assembly 21
13    C_albicans_WO-1_Dec_2013        Candida albicans WO-1
14  C_albicans_WO-1_Jul_2010        Candida albicans WO-1  C_albicans_WO-1_Jul_2010        Candida albicans WO-1
15    C_elegans_Feb_2013      C. elegans Feb 2013 (WBcel235/ce11)
16  C_elegans_May_2008      C. elegans May 2008 (WS190/ce6)  C_elegans_May_2008      C. elegans May 2008 (WS190/ce6)
17  C_elegans_Oct_2010      C. elegans Oct 2010 (WS220/ce10)  C_elegans_Oct_2010      C. elegans Oct 2010 (WS220/ce10)
18  C_papaya_Aug_2010       Carica papaya  C_papaya_Aug_2010       Carica papaya
19  C_porcellus_Feb_2008    Cavia porcellus (Feb 2008) guinea pig (cavPor3)  C_porcellus_Feb_2008    Cavia porcellus (Feb 2008) guinea pig (cavPor3)
20  C_reinhardtii_Nov_2010  Chlamydomonas reinhardtii JGI v4 assembly  C_reinhardtii_Nov_2010  Chlamydomonas reinhardtii JGI v4 assembly
21    C_sabeus_Mar_2014       Chlorocebus sabeus Mar 2014 (Chlorocebus_sabeus 1.1/chlSab2)
22  C_sativa_DH55_Apr_2014  Camelina sativa (false flax) April 2014  C_sativa_DH55_Apr_2014  Camelina sativa (false flax) April 2014
23  L_passim_Apr_2014       Lotmaria passim, strain SF, Crithidia mellificae strain SF, whole genome shotgun sequencing project  D_discoideum_Ax4_May_2009       Dictyostelim discoideum (slime mold) May 2009
24  D_melanogaster_Jul_2014 Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06)  D_melanogaster_Jul_2014 Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06)
25  D_melanogaster_Apr_2006 Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5)  D_melanogaster_Apr_2006 Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5)
26  D_rerio_Jul_2010        Danio rerio (Jul 2010) zebrafish (danRer7/Zv9)  D_rerio_May_2017        Danio rerio (May 2017) zebrafish (GRCz11/danRer11)
27    D_rerio_Jul_2010        Danio rerio (Jul 2010) zebrafish (Zv9/danRer7)
28  E_caballus_Sep_2007     Equus caballus (Sep 2007) horse (equCab2)  E_caballus_Sep_2007     Equus caballus (Sep 2007) horse (equCab2)
29  E_coli_K12-MG1655_Jan_2012      Escherichia coli K12-MG1655  E_coli_K12-MG1655_Jan_2012      Escherichia coli K12-MG1655
30  F_catus_Sep_2011        Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5)  F_catus_Sep_2011        Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5)
 F_catus_Dec_2008        Felis catus (Dec 2008) cat (NHGRI/GTB V17e/felCat4)  
31  F_vesca_Sep_2011        Fragaria vesca (woodland strawberry) v1.  F_vesca_Sep_2011        Fragaria vesca (woodland strawberry) v1.
32  H_sapiens_Dec_2013      Homo sapiens (Dec 2013) human being (GRCh38/hg38)  H_sapiens_Dec_2013      Homo sapiens (Dec 2013) human being (GRCh38/hg38)
33  H_sapiens_Feb_2009      Homo sapiens (Feb 2009) human being (GRCh37/hg19)  H_sapiens_Feb_2009      Homo sapiens (Feb 2009) human being (GRCh37/hg19)
# Line 33  G_gallus_Nov_2011      Gallus gallus (Nov 201 Line 37  G_gallus_Nov_2011      Gallus gallus (Nov 201
37  G_max_Aug_2010  Glycine max Glyma1  G_max_Aug_2010  Glycine max Glyma1
38  G_max_Jan_2014  Glycine max Gmax_275_v2.0  G_max_Jan_2014  Glycine max Gmax_275_v2.0
39  L_africana_Jul_2009     Loxodonta africana (Jul 2009) elephant (loxAfr3)  L_africana_Jul_2009     Loxodonta africana (Jul 2009) elephant (loxAfr3)
40    L_passim_Apr_2014       Lotmaria passim, strain SF, Crithidia mellificae strain SF, whole genome shotgun sequencing project
41  M_acuminata_DH_Pahang_Jan_2016  Musa acuminata DH Pahang (Jan 2016) banana (v2)  M_acuminata_DH_Pahang_Jan_2016  Musa acuminata DH Pahang (Jan 2016) banana (v2)
42  M_domestica_Borkh_Jun_2017      Malus domestica Borkh (GDDH13 Version 1.1) apple  M_domestica_Borkh_Jun_2017      Malus domestica Borkh (GDDH13 Version 1.1) apple
43  M_musculus_Dec_2011     Mus musculus (Dec 2011) mouse (GRCm38/mm10)  M_musculus_Dec_2011     Mus musculus (Dec 2011) mouse (GRCm38/mm10)
44  M_musculus_Jul_2007     Mus musculus (Jul 2007) mouse (NCBI37/mm9)  M_musculus_Jul_2007     Mus musculus (Jul 2007) mouse (NCBI37/mm9)
45  M_musculus_Feb_2006     Mus musculus (Feb 2006) mouse (NCBI36/mm8)  M_musculus_Feb_2006     Mus musculus (Feb 2006) mouse (NCBI36/mm8)
46    M_musculus_Aug_2005     Mus musculus (Aug 2005) mouse (NCBI35/mm7)
47  M_truncatula_Mar_2009   Medicago truncatula Mt3.0 release  M_truncatula_Mar_2009   Medicago truncatula Mt3.0 release
48  N_vectensis_Jun_2007    Nematostella vectensis, starlet sea anemone  N_vectensis_Jun_2007    Nematostella vectensis, starlet sea anemone
49  O_sativa_japonica_Jun_2009      Oryza sativa japonica June 2009  O_sativa_japonica_Jun_2009      Oryza sativa japonica June 2009
# Line 49  P_trichocarpa_Jan_2010 Populus trichocar Line 55  P_trichocarpa_Jan_2010 Populus trichocar
55  P_trichocarpa_Aug_2012  Populus trichocarpa v3  P_trichocarpa_Aug_2012  Populus trichocarpa v3
56  P_troglodytes_Oct_2010  Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3)  P_troglodytes_Oct_2010  Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3)
57  R_communis_May_2008     Ricinis communis TIGR/JCVI v0.1 assembly, castor bean  R_communis_May_2008     Ricinis communis TIGR/JCVI v0.1 assembly, castor bean
58  R_norvegicus_Mar_2012   Rattus Norvegicus (Mar 2012) rat (RGSC 5.0/rn5)  R_norvegicus_Jul_2014   Rattus norvegicus (Jul 2014) rat (RGSC 6.0/rn6)
59    R_norvegicus_Mar_2012   Rattus norvegicus (Mar 2012) rat (RGSC 5.0/rn5)
60  S_bicolor_Jan_2009      Sorghum bicolor v1.0  S_bicolor_Jan_2009      Sorghum bicolor v1.0
61  S_bicolor_Jun_2013      Sorghum bicolor v2.0 (June 2013)  S_bicolor_Jun_2013      Sorghum bicolor v2.0 (June 2013)
62  S_cerevisiae_Apr_2011   S. cerevisiae strain S288C (Apr 2011) budding yeast (sacCer3)  S_cerevisiae_Apr_2011   S. cerevisiae strain S288C (Apr 2011) budding yeast (sacCer3)
# Line 58  S_lycopersicum_May_2012        Solanum lycopers Line 65  S_lycopersicum_May_2012        Solanum lycopers
65  S_lycopersicum_Feb_2014 Solanum lycopersicum (Feb 2014) tomato (SL2.50)  S_lycopersicum_Feb_2014 Solanum lycopersicum (Feb 2014) tomato (SL2.50)
66  S_lycopersicum_Feb_2017 Solanum lycopersicum (Feb 2017) tomato (SL3.0)  S_lycopersicum_Feb_2017 Solanum lycopersicum (Feb 2017) tomato (SL3.0)
67  S_pombe_May_2012        S. pombe (May 2012) fission yeast  S_pombe_May_2012        S. pombe (May 2012) fission yeast
68    S_tuberosum_DM_Jul_2011 Solanum tuberosum Group Phureja clone DM1-3 (potato) v4.03
69  T_castaneum_Mar_2008    Tribolium castaneum (March 2008) red flour beetle  T_castaneum_Mar_2008    Tribolium castaneum (March 2008) red flour beetle
70  T_kodakaraensis_KOD1_May_2004   Thermococcus kodakaraensis May 2004  T_kodakaraensis_KOD1_May_2004   Thermococcus kodakaraensis May 2004
71  T_parvula_May_2012      Thellungiella parvula (salt cress) v2, May 2012  T_parvula_May_2012      Thellungiella parvula (salt cress) v2, May 2012
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