/[genomes]/quickload/species.txt
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Contents of /quickload/species.txt

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IGBF-4266: Synchronize species.txt and synonyms.txt between IGB and SVN
1 Aedes albopictus Asian tiger mosquito A_albopictus
2 Ailuropoda melanoleuca Giant panda A_melanoleuca ailMel Ailuropoda_melanoleuca
3 Alligator mississippiensis American alligator A_mississippiensis allMis
4 Anguilla rostrata American eel A_rostrata
5 Anolis carolinensis Anole lizard A_carolinensis anoCar Anolis_carolinensis
6 Anopheles gambiae Mosquito A_gambiae anoGam
7 Apis mellifera European honey bee A_mellifera apiMel
8 Aplysia californica California sea hare A_californica aplCal
9 Apteryx australis Brown kiwi A_australis aptMan
10 Aquila chrysaetos canadensis Golden eagle A_chrysaetos_canadensis aquChr
11 Aquilegia coerulea Colorado blue columbine A_coerulea
12 Arabidopsis lyrata Lyrate rockcress A_lyrata
13 Arabidopsis thaliana Mouse-ear cress A_thaliana araTha
14 Arbacia punctulata Purple-spined sea urchin A_punctulata
15 Balaenoptera acutorostrata Minke whale B_acutorostrata balAcu
16 Bison bison bison Bison B_bison_bison bisBis
17 Bos taurus Cow B_taurus bosTau Bos_taurus
18 Brachypodium distachyon Purple false brome B_distachyon
19 Branchiostoma floridae Lancet B_floridae braFlo
20 Brassica rapa Field mustard B_rapa
21 Caenorhabditis brenneri C. brenneri (nematode) C_brenneri caePb
22 Caenorhabditis briggsae C. briggsae (nematode) C_briggsae cb
23 Caenorhabditis elegans C. elegans (nematode) C_elegans ce Caenorhabditis_elegans
24 Caenorhabditis japonica C. japonica (nematode) C_japonica caeJap
25 Caenorhabditis remanei C. remanei (nematode) C_remanei caeRem
26 Callithrix jacchus Common marmoset C_jacchus calJac Callithrix_jacchus
27 Callorhinchus milii Elephant shark C_milii calMil
28 Camelina sativa DH55 False flax C_sativa_DH55
29 Candida albicans SC Yeast (Human Flora) SC C_albicans_SC5314
30 Candida albicans WO Yeast (Human Flora) WO C_albicans_WO-1
31 Canis lupus familiaris Dog C_familiaris canFam Canis_familiaris
32 Cannabis sativa CBDRx Cannabis sativa CBDRx C_sativa_CBDRx
33 Capitella teleta Capitella teleta C_teleta
34 Capsella rubella Red shepherd's purse C_rubella
35 Carica papaya Papaya C_papaya
36 Cavia porcellus Guinea pig C_porcellus cavPor Cavia_porcellus
37 Ceratotherium simum White rhinoceros C_simum cerSim
38 Chlamydomonas reinhardtii motile single-celled green alga C_reinhardtii
39 Chlorocebus sabaeus African green monkey C_sabaeus chlSab
40 Choloepus hoffmanni Two-toed sloth C_hoffmanni choHof Choloepus_hoffmanni
41 Chrysemys picta Painted turtle C_picta Chrysemys_picta chrPic
42 Citrus clementina Clementine mandarin C_clementina
43 Citrus sinensis Sweet orange C_sinensis
44 Ciona intestinalis Vase tunicate (sea squirt) C_intestinalis ci Ciona_intestinalis
45 Ciona savignyi Pacific sea squirt C_savignyi Ciona_savignyi C. savignyi
46 Cricetulus griseus Chinese hamster C_griseus criGri criGriChoV
47 Cucumis sativus Cucumber C_sativus
48 Dama dama Fallow deer D_dama
49 Danio rerio Zebrafish D_rerio danRer Danio_rerio
50 Daphnia magna water flea D_magna
51 Daphnia pulex water flea D_pulex
52 Dasypus novemcinctus Nine-banded armadillo D_novemcinctus dasNov Dasypus_novemcinctus
53 Dictyostelium discoideum slime mold D_discoideum
54 Drosophila ananassae D. ananassae (fruit fly) D_ananassae droAna
55 Drosophila erecta D. erecta (fruit fly) D_erecta droEre
56 Drosophila grimshawi D. grimshawi (fruit fly) D_grimshawi droGri
57 Drosophila melanogaster Vinegar (fruit) fly D_melanogaster dm Drosophila_melanogaster
58 Drosophila mojavensis D. mojavensis (fruit fly) D_mojavensis droMoj
59 Drosophila persimilis D. persimilis (fruit fly) D_persimilis droPer
60 Drosophila pseudoobscura D. pseudoobscura (fruit fly) D_pseudoobscura dp
61 Drosophila sechellia D. sechelia (fruit fly) D_sechellia droSec
62 Drosophila simulans D. simulans (fruit fly) D_simulans droSim
63 Drosophila virilis D. virilis (fruit fly) D_virilis droVir
64 Drosophila yakuba D. yakuba (fruit fly) D_yakuba droYak
65 Dipodomys ordii Kangaroo rat D_ordii dipOrd Dipodomys_ordii
66 Ebola virus Ebola virus E_virus eboVir
67 Echinops telfairi Lesser hedgehog tenrec E_telfairi Echinops_telfairi echTel
68 Enhydra lutris nereis Southern sea otter E_lutris_nereis enhLutNer
69 Equus caballus Horse E_caballus equCab Equus_caballus
70 Erinaceus europaeus European hedgehog E_europaeus eriEur Erinaceus_europaeus
71 Escherichia coli K12-MG1655 E. coli K12-MG1655 E_coli_K12-MG1655
72 Euprymna scolopes Hawaiian bobtail squid E_scolopes
73 Eucalyptus grandis Eucalyptus E_grandis
74 Felis catus Cat F_catus felCat Felis_catus
75 Ficedula albicollis Collared flycatcher F_albicollis
76 Fragaria vesca Woodland strawberry F_vesca
77 Galeopterus variegatus Malayan flying lemur G_variegatus galVar
78 Gallus gallus Chicken G_gallus galGal Gallus_gallus
79 Gasterosteus aculeatus Stickleback G_aculeatus gasAcu Gasterosteus_aculeatus
80 Geospiza fortis Medium ground finch G_fortis geoFor
81 Glycine max Soybean G_max
82 Gorilla gorilla Western gorilla G_gorilla gorGor Gorilla_gorilla
83 Gadus morhua Atlantic cod G_morhua gadMor
84 Gossypium hirsutum Upland cotton G_hirsutum
85 Gossypium raimondii Cotton D G_raimondii
86 Heterocephalus glaber Naked mole rat H_glaber hetGla
87 Homo sapiens Human H_sapiens hg Homo_sapiens
88 Homo sapiens T2T Human Telomere to Telomere H_sapiens_T2T hs
89 Hydra vulgaris Swiftwater hydra H_vulgaris
90 Hypsibius exemplaris Z151 Tardigrade water bear H_exemplaris_Z151
91 Hordeum vulgare Barley H_vulgare
92 Latimeria chalumnae Coelacanth L_chalumnae latCha
93 Lemna gibba Gibbous duckweed L_gibba
94 Linum usitatissimum flax L_usitatissimum
95 Loligo pealeii Longfin inshore squid L_pealeii
96 Loxodonta africana African bush elephant L_africana loxAfr Loxodonta_africana
97 Lotus japonicus a model legume L_japonicus
98 Lotmaria passim honeybee parasite L_passim
99 Macaca fascicularis Crab-eating macaque M_fascicularis macFas
100 Macaca mulatta Rhesus monkey M_mulatta rheMac Macaca_mulatta
101 Macropus eugenii Tammar wallaby M_eugenii Macropus_eugenii macEug
102 Malus domestica Borkh Apple M_domestica_Borkh
103 Manihot esculenta Cassava M_esculenta
104 Manis pentadactyla Chinese pangolin M_pentadactyla manPen
105 Medicago truncatula Barrel medic M_truncatula
106 Meleagris gallopavo Turkey M_gallopavo Meleagris_gallopavo melGal
107 Melopsittacus undulatus Budgie M_undulatus melUnd
108 Microcebus murinus Gray mouse lemur M_murinus micMur Microcebus_murinus
109 Mimulus guttatus Monkey flower M_guttatus
110 Monkeypox virus monkeypox M_virus mpxvRivers
111 Monodelphis domestica Opossum M_domestica_metatherian monDom
112 Monosiga brevicollis Choanoflagellates M_brevicollis
113 Mus musculus House mouse M_musculus mm Mus_musculus
114 Musa acuminata DH Pahang banana M_acuminata_DH_Pahang
115 Mustela putorius furo Domesticated ferret M_putorius musFur
116 Mycobacterium abscessus M. abcessus M_abscessus
117 Mycobacterium smegmatis M. smegmatis M_smegmatis
118 Mycobacterium tuberculosis M. tuberculosis M_tuberculosis
119 Myotis lucifugus Little brown bat M_lucifugus Myotis_lucifugus myoLuc
120 Nasalis larvatus Proboscis monkey N_larvatus nasLar
121 Nanorana parkeri Tibetan frog N_parkeri nanPar
122 Nematostella vectensis Starlet sea anemone N_vectensis
123 Neomonachus schauinslandi Hawaiian monk seal N_schauinslandi neoSch
124 Nicotiana tabacum Tobacco N_tabacum
125 Nomascus leucogenys Northern white-cheeked gibbon N_leucogenys nomLeu
126 Ochotona princeps American pika O_princeps ochPri Ochotona_princeps
127 Oreochromis niloticus Nile tilapia O_niloticus oreNil
128 Ornithorhynchus anatinus Platypus O_anatinus ornAna Ornithorhynchus_anatinus
129 Oryctolagus cuniculus European rabbit O_cuniculus Oryctolagus_cuniculus oryCun
130 Oryza sativa indica Rice (indica) O_sativa_indica
131 Oryza sativa japonica Rice (japonica) O_sativa O_sativa_japonica
132 Oryzias latipes Japanese medaka O_latipes oryLat Oryzias_latipes oryzias_latipes
133 Otolemur garnettii Northern greater galago O_garnettii otoGar Otolemur_garnettii
134 Ostreococcus lucimarinus Plankton O_lucimarinus
135 Ovis aries Sheep O_aries OAR oviAri
136 Pan paniscus Bonobo P_paniscus panPan
137 Pan troglodytes Chimp P_troglodytes panTro Pan_troglodytes
138 Panicum virgatum Switchgrass P_virgatum
139 Papio anubis Olive baboon P_anubis papAnu
140 Papio hamadryas Hamadryas baboon P_hamadryas papHam
141 Petromyzon marinus Lamprey P_marinus petMar
142 Phaseolus vulgaris Common bean P_vulgaris
143 Physcomitrella patens Moss P_patens
144 Pinus taeda Loblolly Pine P_taeda
145 Plasmodium falciparum Malaria parasite P_falciparum Pfalciparum_3D7_plasmoDB-5.4 Pfalciparum_3D7_plasmoDB-5.5
146 Pongo pygmaeus abelii Orangutan P_abelii ponAbe Pongo_pygmaeus
147 Populus trichocarpa Black cottonwood P_trichocarpa
148 Pristionchus pacificus P. pacificus (nematode) P_pacificus priPac
149 Procavia capensis Rock hyrax P_capensis proCap Procavia_capensis
150 Pseudomonas aeruginosa P. aeruginosa P_aeruginosa
151 Pteropus vampyrus Large flying fox P_vampyrus pteVam Pteropus_vampyrus
152 Prunus persica Peach P_persica
153 Ramazzottius varieornatus YOKOZUNA-1 Tardigrade R_varieornatus_YOKOZUNA-1
154 Rattus norvegicus Rat R_norvegicus rn Rattus_norvegicus
155 Rhinopithecus roxellana Golden snub-nosed monkey R_roxellana rhiRox
156 Ricinus communis Castor oil plant R_communis
157 Saccharomyces cerevisiae Budding Yeast S_cerevisiae sacCer Saccharomyces_cerevisiae
158 Saimiri boliviensis Squirrel monkey S_boliviensis saiBol
159 Sarcophilus harrisii Tasmanian devil S_harrisii sarHar
160 SARS-CoV-2 virus SARS-CoV-2 S_virus wuhCor
161 Schizosaccharomyces pombe Fission Yeast S_pombe
162 Selaginella moellendorffii Spikemoss S_moellendorffii
163 Setaria italica Foxtail millet S_italica
164 Sigmodon hispidus Cotton rat S_hispidus
165 Sodalis glossinidius Tsetse fly endosymbiont S_glossinidius
166 Solanum lycopersicum Tomato S_lycopersicum
167 Solanum tuberosum Phureja Potato S_tuberosum_DM
168 Sorex araneus Eurasian shrew S_araneus sorAra Sorex_araneus
169 Sorghum bicolor Sorghum S_bicolor
170 Spermophilus tridecemlineatus Thirteen-lined ground squirrel S_tridecemlineatus speTri Spermophilus_tridecemlineatus
171 Strongylocentrotus purpuratus Purple sea urchin S_purpuratus strPur
172 Sus scrofa Wild boar S_scrofa Sus_scrofa susScr
173 Taeniopygia guttata Zebra finch T_guttata taeGut Taeniopygia_guttata
174 Takifugu rubripes Fugu T_rubripes fr Takifugu_rubripes
175 Tarsius syrichta Philippine tarsier T_syrichta tarSyr Tarsius_syrichta
176 Tetraodon nigroviridis Tetraodon T_nigroviridis tetNig Tetraodon_nigroviridis
177 Thamnophis sirtalis Garter snake T_sirtalis thaSir
178 Thellungiella halophila Salt cress T_halophila
179 Thellungiella parvula Anatolian cress T_parvula
180 Thermococcus kodakaraensis KOD1 Hyperthermophilic Archaeon T_kodakaraensis_KOD1 T. kodakaraensis_KOD1 T_kodakaraensis_KOD
181 Tribolium castaneum Red flour beetle T_castaneum
182 Trichechus manatus latirostris West Indian manatee T_manatus triMan
183 Triticum aestivum Common wheat T_aestivum
184 Trypanosoma brucei Protozoan parasites T_brucei
185 Tupaia belangeri Northern tree shrew T_belangeri tupBel Tupaia_belangeri
186 Tursiops truncatus Bottlenose dolphin T_truncatus turTru Tursiops_truncatus
187 Vaccinium corymbosum Blueberry V_corymbosum
188 Vanessa cardui Painted lady V_cardui
189 Vicugna pacos Alpaca V_pacos vicPac Vicugna_pacos
190 Vitis vinifera Grape vine V_vinifera
191 Volvox carteri Volvox V_carteri
192 Xenopus laevis African clawed frog X_laevis xenLae
193 Xenopus tropicalis Pipid frog X_tropicalis xenTro Xenopus_tropicalis
194 Yersinia pestis Bubonic plague pathogen Y_pestis
195 Yersinia pseudotuberculosis Y. pseudotuberculosis Y_pseudotuberculosis
196 Yarrowia lipolytica CLIB122 CLIB122 Y_lipolytica_CLIB
197 Yarrowia lipolytica PO1f PO1f Y_lipolytica_PO
198 Yarrowia lipolytica WSH-Z06 WSHZ06 Y_lipolytica_WSH
199 Zea mays B73 Maize B73 Z_mays_B73

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