/[genomes]/quickload/species.txt
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Annotation of /quickload/species.txt

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Tue Jul 22 15:23:31 2025 UTC (3 weeks, 2 days ago) by pkulzer
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IGBF-4266: Synchronize species.txt and synonyms.txt between IGB and SVN
1 pkulzer 230 Aedes albopictus Asian tiger mosquito A_albopictus
2     Ailuropoda melanoleuca Giant panda A_melanoleuca ailMel Ailuropoda_melanoleuca
3     Alligator mississippiensis American alligator A_mississippiensis allMis
4     Anguilla rostrata American eel A_rostrata
5     Anolis carolinensis Anole lizard A_carolinensis anoCar Anolis_carolinensis
6     Anopheles gambiae Mosquito A_gambiae anoGam
7     Apis mellifera European honey bee A_mellifera apiMel
8     Aplysia californica California sea hare A_californica aplCal
9     Apteryx australis Brown kiwi A_australis aptMan
10     Aquila chrysaetos canadensis Golden eagle A_chrysaetos_canadensis aquChr
11     Aquilegia coerulea Colorado blue columbine A_coerulea
12     Arabidopsis lyrata Lyrate rockcress A_lyrata
13     Arabidopsis thaliana Mouse-ear cress A_thaliana araTha
14     Arbacia punctulata Purple-spined sea urchin A_punctulata
15     Balaenoptera acutorostrata Minke whale B_acutorostrata balAcu
16     Bison bison bison Bison B_bison_bison bisBis
17     Bos taurus Cow B_taurus bosTau Bos_taurus
18     Brachypodium distachyon Purple false brome B_distachyon
19     Branchiostoma floridae Lancet B_floridae braFlo
20     Brassica rapa Field mustard B_rapa
21     Caenorhabditis brenneri C. brenneri (nematode) C_brenneri caePb
22     Caenorhabditis briggsae C. briggsae (nematode) C_briggsae cb
23     Caenorhabditis elegans C. elegans (nematode) C_elegans ce Caenorhabditis_elegans
24     Caenorhabditis japonica C. japonica (nematode) C_japonica caeJap
25     Caenorhabditis remanei C. remanei (nematode) C_remanei caeRem
26     Callithrix jacchus Common marmoset C_jacchus calJac Callithrix_jacchus
27     Callorhinchus milii Elephant shark C_milii calMil
28     Camelina sativa DH55 False flax C_sativa_DH55
29     Candida albicans SC Yeast (Human Flora) SC C_albicans_SC5314
30     Candida albicans WO Yeast (Human Flora) WO C_albicans_WO-1
31     Canis lupus familiaris Dog C_familiaris canFam Canis_familiaris
32 aloraine 122 Cannabis sativa CBDRx Cannabis sativa CBDRx C_sativa_CBDRx
33 pkulzer 230 Capitella teleta Capitella teleta C_teleta
34     Capsella rubella Red shepherd's purse C_rubella
35     Carica papaya Papaya C_papaya
36     Cavia porcellus Guinea pig C_porcellus cavPor Cavia_porcellus
37     Ceratotherium simum White rhinoceros C_simum cerSim
38     Chlamydomonas reinhardtii motile single-celled green alga C_reinhardtii
39     Chlorocebus sabaeus African green monkey C_sabaeus chlSab
40     Choloepus hoffmanni Two-toed sloth C_hoffmanni choHof Choloepus_hoffmanni
41     Chrysemys picta Painted turtle C_picta Chrysemys_picta chrPic
42     Citrus clementina Clementine mandarin C_clementina
43     Citrus sinensis Sweet orange C_sinensis
44     Ciona intestinalis Vase tunicate (sea squirt) C_intestinalis ci Ciona_intestinalis
45     Ciona savignyi Pacific sea squirt C_savignyi Ciona_savignyi C. savignyi
46     Cricetulus griseus Chinese hamster C_griseus criGri criGriChoV
47     Cucumis sativus Cucumber C_sativus
48     Dama dama Fallow deer D_dama
49     Danio rerio Zebrafish D_rerio danRer Danio_rerio
50 aloraine 106 Daphnia magna water flea D_magna
51     Daphnia pulex water flea D_pulex
52 pkulzer 230 Dasypus novemcinctus Nine-banded armadillo D_novemcinctus dasNov Dasypus_novemcinctus
53     Dictyostelium discoideum slime mold D_discoideum
54     Drosophila ananassae D. ananassae (fruit fly) D_ananassae droAna
55     Drosophila erecta D. erecta (fruit fly) D_erecta droEre
56     Drosophila grimshawi D. grimshawi (fruit fly) D_grimshawi droGri
57     Drosophila melanogaster Vinegar (fruit) fly D_melanogaster dm Drosophila_melanogaster
58     Drosophila mojavensis D. mojavensis (fruit fly) D_mojavensis droMoj
59     Drosophila persimilis D. persimilis (fruit fly) D_persimilis droPer
60     Drosophila pseudoobscura D. pseudoobscura (fruit fly) D_pseudoobscura dp
61     Drosophila sechellia D. sechelia (fruit fly) D_sechellia droSec
62     Drosophila simulans D. simulans (fruit fly) D_simulans droSim
63     Drosophila virilis D. virilis (fruit fly) D_virilis droVir
64     Drosophila yakuba D. yakuba (fruit fly) D_yakuba droYak
65     Dipodomys ordii Kangaroo rat D_ordii dipOrd Dipodomys_ordii
66     Ebola virus Ebola virus E_virus eboVir
67     Echinops telfairi Lesser hedgehog tenrec E_telfairi Echinops_telfairi echTel
68     Enhydra lutris nereis Southern sea otter E_lutris_nereis enhLutNer
69     Equus caballus Horse E_caballus equCab Equus_caballus
70     Erinaceus europaeus European hedgehog E_europaeus eriEur Erinaceus_europaeus
71     Escherichia coli K12-MG1655 E. coli K12-MG1655 E_coli_K12-MG1655
72     Euprymna scolopes Hawaiian bobtail squid E_scolopes
73     Eucalyptus grandis Eucalyptus E_grandis
74     Felis catus Cat F_catus felCat Felis_catus
75     Ficedula albicollis Collared flycatcher F_albicollis
76     Fragaria vesca Woodland strawberry F_vesca
77     Galeopterus variegatus Malayan flying lemur G_variegatus galVar
78     Gallus gallus Chicken G_gallus galGal Gallus_gallus
79     Gasterosteus aculeatus Stickleback G_aculeatus gasAcu Gasterosteus_aculeatus
80     Geospiza fortis Medium ground finch G_fortis geoFor
81     Glycine max Soybean G_max
82     Gorilla gorilla Western gorilla G_gorilla gorGor Gorilla_gorilla
83     Gadus morhua Atlantic cod G_morhua gadMor
84     Gossypium hirsutum Upland cotton G_hirsutum
85     Gossypium raimondii Cotton D G_raimondii
86     Heterocephalus glaber Naked mole rat H_glaber hetGla
87     Homo sapiens Human H_sapiens hg Homo_sapiens
88     Homo sapiens T2T Human Telomere to Telomere H_sapiens_T2T hs
89 pkulzer 200 Hydra vulgaris Swiftwater hydra H_vulgaris
90 pkulzer 230 Hypsibius exemplaris Z151 Tardigrade water bear H_exemplaris_Z151
91     Hordeum vulgare Barley H_vulgare
92     Latimeria chalumnae Coelacanth L_chalumnae latCha
93     Lemna gibba Gibbous duckweed L_gibba
94     Linum usitatissimum flax L_usitatissimum
95     Loligo pealeii Longfin inshore squid L_pealeii
96     Loxodonta africana African bush elephant L_africana loxAfr Loxodonta_africana
97     Lotus japonicus a model legume L_japonicus
98     Lotmaria passim honeybee parasite L_passim
99     Macaca fascicularis Crab-eating macaque M_fascicularis macFas
100     Macaca mulatta Rhesus monkey M_mulatta rheMac Macaca_mulatta
101     Macropus eugenii Tammar wallaby M_eugenii Macropus_eugenii macEug
102     Malus domestica Borkh Apple M_domestica_Borkh
103     Manihot esculenta Cassava M_esculenta
104     Manis pentadactyla Chinese pangolin M_pentadactyla manPen
105     Medicago truncatula Barrel medic M_truncatula
106     Meleagris gallopavo Turkey M_gallopavo Meleagris_gallopavo melGal
107     Melopsittacus undulatus Budgie M_undulatus melUnd
108     Microcebus murinus Gray mouse lemur M_murinus micMur Microcebus_murinus
109     Mimulus guttatus Monkey flower M_guttatus
110     Monkeypox virus monkeypox M_virus mpxvRivers
111     Monodelphis domestica Opossum M_domestica_metatherian monDom
112     Monosiga brevicollis Choanoflagellates M_brevicollis
113     Mus musculus House mouse M_musculus mm Mus_musculus
114     Musa acuminata DH Pahang banana M_acuminata_DH_Pahang
115     Mustela putorius furo Domesticated ferret M_putorius musFur
116     Mycobacterium abscessus M. abcessus M_abscessus
117     Mycobacterium smegmatis M. smegmatis M_smegmatis
118     Mycobacterium tuberculosis M. tuberculosis M_tuberculosis
119     Myotis lucifugus Little brown bat M_lucifugus Myotis_lucifugus myoLuc
120     Nasalis larvatus Proboscis monkey N_larvatus nasLar
121     Nanorana parkeri Tibetan frog N_parkeri nanPar
122     Nematostella vectensis Starlet sea anemone N_vectensis
123     Neomonachus schauinslandi Hawaiian monk seal N_schauinslandi neoSch
124     Nicotiana tabacum Tobacco N_tabacum
125     Nomascus leucogenys Northern white-cheeked gibbon N_leucogenys nomLeu
126     Ochotona princeps American pika O_princeps ochPri Ochotona_princeps
127     Oreochromis niloticus Nile tilapia O_niloticus oreNil
128     Ornithorhynchus anatinus Platypus O_anatinus ornAna Ornithorhynchus_anatinus
129     Oryctolagus cuniculus European rabbit O_cuniculus Oryctolagus_cuniculus oryCun
130     Oryza sativa indica Rice (indica) O_sativa_indica
131     Oryza sativa japonica Rice (japonica) O_sativa O_sativa_japonica
132     Oryzias latipes Japanese medaka O_latipes oryLat Oryzias_latipes oryzias_latipes
133     Otolemur garnettii Northern greater galago O_garnettii otoGar Otolemur_garnettii
134     Ostreococcus lucimarinus Plankton O_lucimarinus
135     Ovis aries Sheep O_aries OAR oviAri
136     Pan paniscus Bonobo P_paniscus panPan
137     Pan troglodytes Chimp P_troglodytes panTro Pan_troglodytes
138     Panicum virgatum Switchgrass P_virgatum
139     Papio anubis Olive baboon P_anubis papAnu
140     Papio hamadryas Hamadryas baboon P_hamadryas papHam
141     Petromyzon marinus Lamprey P_marinus petMar
142     Phaseolus vulgaris Common bean P_vulgaris
143     Physcomitrella patens Moss P_patens
144     Pinus taeda Loblolly Pine P_taeda
145     Plasmodium falciparum Malaria parasite P_falciparum Pfalciparum_3D7_plasmoDB-5.4 Pfalciparum_3D7_plasmoDB-5.5
146     Pongo pygmaeus abelii Orangutan P_abelii ponAbe Pongo_pygmaeus
147     Populus trichocarpa Black cottonwood P_trichocarpa
148     Pristionchus pacificus P. pacificus (nematode) P_pacificus priPac
149     Procavia capensis Rock hyrax P_capensis proCap Procavia_capensis
150     Pseudomonas aeruginosa P. aeruginosa P_aeruginosa
151     Pteropus vampyrus Large flying fox P_vampyrus pteVam Pteropus_vampyrus
152     Prunus persica Peach P_persica
153     Ramazzottius varieornatus YOKOZUNA-1 Tardigrade R_varieornatus_YOKOZUNA-1
154     Rattus norvegicus Rat R_norvegicus rn Rattus_norvegicus
155     Rhinopithecus roxellana Golden snub-nosed monkey R_roxellana rhiRox
156     Ricinus communis Castor oil plant R_communis
157     Saccharomyces cerevisiae Budding Yeast S_cerevisiae sacCer Saccharomyces_cerevisiae
158     Saimiri boliviensis Squirrel monkey S_boliviensis saiBol
159     Sarcophilus harrisii Tasmanian devil S_harrisii sarHar
160     SARS-CoV-2 virus SARS-CoV-2 S_virus wuhCor
161     Schizosaccharomyces pombe Fission Yeast S_pombe
162     Selaginella moellendorffii Spikemoss S_moellendorffii
163     Setaria italica Foxtail millet S_italica
164     Sigmodon hispidus Cotton rat S_hispidus
165     Sodalis glossinidius Tsetse fly endosymbiont S_glossinidius
166     Solanum lycopersicum Tomato S_lycopersicum
167     Solanum tuberosum Phureja Potato S_tuberosum_DM
168     Sorex araneus Eurasian shrew S_araneus sorAra Sorex_araneus
169     Sorghum bicolor Sorghum S_bicolor
170     Spermophilus tridecemlineatus Thirteen-lined ground squirrel S_tridecemlineatus speTri Spermophilus_tridecemlineatus
171     Strongylocentrotus purpuratus Purple sea urchin S_purpuratus strPur
172     Sus scrofa Wild boar S_scrofa Sus_scrofa susScr
173     Taeniopygia guttata Zebra finch T_guttata taeGut Taeniopygia_guttata
174     Takifugu rubripes Fugu T_rubripes fr Takifugu_rubripes
175     Tarsius syrichta Philippine tarsier T_syrichta tarSyr Tarsius_syrichta
176     Tetraodon nigroviridis Tetraodon T_nigroviridis tetNig Tetraodon_nigroviridis
177     Thamnophis sirtalis Garter snake T_sirtalis thaSir
178     Thellungiella halophila Salt cress T_halophila
179     Thellungiella parvula Anatolian cress T_parvula
180     Thermococcus kodakaraensis KOD1 Hyperthermophilic Archaeon T_kodakaraensis_KOD1 T. kodakaraensis_KOD1 T_kodakaraensis_KOD
181     Tribolium castaneum Red flour beetle T_castaneum
182     Trichechus manatus latirostris West Indian manatee T_manatus triMan
183     Triticum aestivum Common wheat T_aestivum
184     Trypanosoma brucei Protozoan parasites T_brucei
185     Tupaia belangeri Northern tree shrew T_belangeri tupBel Tupaia_belangeri
186     Tursiops truncatus Bottlenose dolphin T_truncatus turTru Tursiops_truncatus
187     Vaccinium corymbosum Blueberry V_corymbosum
188 pkulzer 208 Vanessa cardui Painted lady V_cardui
189 pkulzer 230 Vicugna pacos Alpaca V_pacos vicPac Vicugna_pacos
190     Vitis vinifera Grape vine V_vinifera
191     Volvox carteri Volvox V_carteri
192     Xenopus laevis African clawed frog X_laevis xenLae
193     Xenopus tropicalis Pipid frog X_tropicalis xenTro Xenopus_tropicalis
194     Yersinia pestis Bubonic plague pathogen Y_pestis
195     Yersinia pseudotuberculosis Y. pseudotuberculosis Y_pseudotuberculosis
196     Yarrowia lipolytica CLIB122 CLIB122 Y_lipolytica_CLIB
197     Yarrowia lipolytica PO1f PO1f Y_lipolytica_PO
198     Yarrowia lipolytica WSH-Z06 WSHZ06 Y_lipolytica_WSH
199     Zea mays B73 Maize B73 Z_mays_B73

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