/[genomes]/quickload
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Index of /quickload

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Directory revision: 199 (of 199)
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File Rev. Age Author (rev) Last log entry
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H_exemplaris_Z151_Apr_2017/  186  7 months  pkulzer   IGBF-3682: Fix typo in annots.xml; Apr 24, 2024
S_pombe_May_2012/  183  8 months  pkulzer   IGBF-1122: Update S. pombe URL attribute; Apr 4, 2024
C_elegans_Oct_2010/  156  3 years  nfreese   IGBF-2696;Add ce10 ENCODE blacklist v2;Sep 22, 2021
D_melanogaster_Aug_2014/  193  6 months  nfreese   IGBF-3666: Remove return carriages in D melanogaster Aug 2014 refGene annotation…
M_musculus_Dec_2011/  160  3 years  nfreese   IGBF-2696;Add mm10 ENCODE blacklist v2;Sep 22, 2021
H_sapiens_Feb_2009/  159  3 years  nfreese   IGBF-2696;Add hg19 ENCODE blacklist v2;Sep 22, 2021
F_albicollis_Jun_2013/  154  3 years  nfreese   IGBF-2803:Add Ficedula albicollis genome;Mar 29, 2021
D_melanogaster_Apr_2006/  157  3 years  nfreese   IGBF-2696;Add dm3 ENCODE blacklist v2;Sep 22, 2021
C_elegans_Feb_2013/  155  3 years  nfreese   IGBF-2696;Add ce11 ENCODE blacklist v2;Sep 22, 2021
R_varieornatus_YOKOZUNA-1_Nov_2016/  195  5 months  nfreese   IGBF-3682: Add Ramazzottius varieornatus Nov 2016 genome; Jul 8, 2024
M_musculus_Jun_2020/  173  17 months  nfreese   IGBF-3330: Add Mus musculus Jun 2020 genome;Jun 29, 2023
L_passim_Apr_2014/  148  3 years  nfreese   Fix off by one in protein match;Feb 2, 2021
R_norvegicus_Nov_2020/  176  17 months  nfreese   IGBF-3362: Add Rattus norvegicus Nov 2020 genome;Jun 29, 2023
A_rostrata_Oct_2016/  106  5 years  aloraine   Add American eel as per community request - see IGBF-1546
T_kodakaraensis_KOD1_May_2004/  59  6 years  aloraine   Add Thermococcus kodakaraensis May 2004 genome, collected from Genbank accession…
Y_lipolytica_PO1f_May_2014/  63  6 years  aloraine   Add Y_lipolytica genomes, collected from Genbank
A_gambiae_Oct_2006/  105  5 years  aloraine   Fix close tag
C_reinhardtii_Nov_2010/  21  6 years  aloraine   Add Chlamydomonas reinhardtii JGI v4 assembly
F_vesca_Sep_2011/  32  6 years  aloraine   Add Fragaria vesca (woodland strawberry) v1
V_vinifera_Mar_2010/  62  6 years  aloraine   Add 12X March 2010 wine grape draft genome Vitis vinifera genome assembly
D_pulex_Sep_2016/  108  5 years  aloraine   IGBF-1915 - Add water flea (Daphnia) genomes
T_rubripes_Oct_2011/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
S_lycopersicum_May_2012/  56  6 years  aloraine   Add Solanum lycopersicum (tomato) May 2012/SL2.40 genome assembly
O_sativa_japonica_Jun_2009/  43  6 years  aloraine   Add Oryza sativa japonica June 2009 and Oryza sativa japonica variety Os-Nipponb…
A_gambiae_Feb_2003/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
C_sativa_DH55_Apr_2014/  22  6 years  aloraine   Add Camelina sativa (false flax) April 2014 assembly
S_bicolor_Jan_2009/  53  6 years  aloraine   Add Sorghum bicolor v1.0 and v2.0 (June 2013) genome assemblies, collected from …
Y_lipolytica_CLIB122_Jul_2004/  63  6 years  aloraine   Add Y_lipolytica genomes, collected from Genbank
X_tropicalis_Nov_2009/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
C_albicans_WO-1_Dec_2013/  107  5 years  aloraine   IGBF-1498 Add C. albicans Dec 2013 assembly and annotations
P_trichocarpa_Aug_2012/  46  6 years  aloraine   Add Populus trichocarpa v2 and v3 genomes, collected from Phytozome
S_tuberosum_DM_Jul_2011/  74  6 years  aloraine   Add gene model annotations converted from http://solanaceae.plantbiology.msu.edu
H_sapiens_Mar_2006/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
A_melanoleuca_Dec_2009/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
P_trichocarpa_Jan_2010/  46  6 years  aloraine   Add Populus trichocarpa v2 and v3 genomes, collected from Phytozome
D_rerio_May_2017/  87  5 years  aloraine   Add zebrafish May 2017 genome and annotations
F_catus_Sep_2011/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
S_lycopersicum_Jun_2022/  190  6 months  aloraine   IGBF-3172 Include F3H and enzyme name in description for PRAM_26184 in SL5
T_aestivum_Aug_2018/  125  4 years  aloraine   IGBF-2548 Use uncompressed file to distribute gene models
A_lyrata_Apr_2011/  5  6 years  aloraine   Add Arabidopsis lyrata genome assembly and annotations, from Phytozome
H_sapiens_May_2004/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
P_troglodytes_Oct_2010/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
G_gallus_Nov_2011/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
S_lycopersicum_Sep_2019/  191  6 months  aloraine   IGBF-3172 Include F3H and enzyme name in description for Solyc02g083860 in SL4
C_porcellus_Feb_2008/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
B_distachyon_Aug_2010/  14  6 years  aloraine   Add Brachypodium distachyon JGI v1.0 8x assembly
C_sabaeus_Mar_2014/  94  5 years  aloraine   Add green monkey sequence
D_discoideum_Ax4_May_2009/  23  6 years  aloraine   Add Dictyostelim discoideum (slime mold) May 2009 assembly and annotations, from…
D_magna_Apr_2010/  108  5 years  aloraine   IGBF-1915 - Add water flea (Daphnia) genomes
M_musculus_Aug_2005/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
R_communis_May_2008/  52  6 years  aloraine   Add Ricinis communis TIGR/JCVI v0.1 assembly, castor bean
C_albicans_SC5314_Nov_2008/  90  5 years  aloraine   Add Candida albicans SC5314 Assembly 22 Jun_2014
M_truncatula_Mar_2009/  40  6 years  aloraine   Add Medicago truncatula Mt3.0 release from Phytozome v7
X_tropicalis_Jul_2016/  116  4 years  aloraine   Add Xenopus tropicalis Jul 2016 assembly with RefSeq All (ncbiRefSeq) gene model…
L_africana_Jul_2009/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
M_acuminata_DH_Pahang_Jan_2016/  37  6 years  aloraine   Add Musa acuminata DH Pahang (Jan 2016) banana (v2) genome assembly and annotati…
M_domestica_Borkh_Jun_2017/  38  6 years  aloraine   Add Malus domestica Borkh (GDDH13 Version 1.1) apple genome assembly and annotat…
B_taurus_Jun_2014/  86  6 years  aloraine   Add HEADER.md for rat & cow; Fix error
D_melanogaster_Jul_2014/  111  5 years  aloraine   IGBF-1492 - Add note indicating FlyBase models came from FlyBase original GFF
T_castaneum_Mar_2008/  58  6 years  aloraine   Add Tribolium castaneum (March 2008) red flour beetle
C_albicans_WO-1_Jul_2010/  106  5 years  aloraine   Add American eel as per community request - see IGBF-1546
D_magna_Jan_2019/  108  5 years  aloraine   IGBF-1915 - Add water flea (Daphnia) genomes
Z_mays_B73_Mar_2010/  64  6 years  aloraine   Add Zea Mays B73 RefGenv2 genome assembly and annotations, from Maize genome dat…
M_musculus_Jul_2007/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
S_cerevisiae_Apr_2011/  117  4 years  aloraine   Update budding yeast gene model annotations and annots.xml configuration
S_lycopersicum_Feb_2017/  120  4 years  aloraine   Add multi-exon Cufflinks gene models from article titled Expanding Alternative S…
S_lycopersicum_Feb_2014/  55  6 years  aloraine   Add Solanum lycopersicum (tomato) May 2012/SL2.40 and Feb 2014/SL2.50 genome ass…
G_max_Jan_2014/  35  6 years  aloraine   Add Glycine max (soybean) Gmax_275_v2.0 genome assembly and annotations, collect…
R_norvegicus_Jul_2014/  82  6 years  aloraine   Add rn6 (rat)
styling/  177  15 months  aloraine   IGBF-3395 IGBF-3173 Get code from lorainelab CDN address
A_mellifera_Jan_2005/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
N_vectensis_Jun_2007/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
C_elegans_May_2008/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
O_aries_Feb_2010/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
S_bicolor_Jun_2013/  53  6 years  aloraine   Add Sorghum bicolor v1.0 and v2.0 (June 2013) genome assemblies, collected from …
S_cerevisiae_Jun_2008/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
P_persica_Apr_2010/  45  6 years  aloraine   Add Prunus persica v1 genome assembly, collected from Phytozome v7
A_thaliana_Jun_2009/  76  6 years  aloraine   Load Araport gene models instead of TAIR10 mRNA
A_thaliana_Apr_2008/  103  5 years  aloraine   Use tabix-indexed files for TAIR8 annotations
T_parvula_May_2012/  60  6 years  aloraine   Add Thellungiella parvula (salt cress) v2, May 2012 genome assembly
M_musculus_Feb_2006/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
G_max_Aug_2010/  34  6 years  aloraine   Add Glycine max Glyma1 soybean genome assembly and annotations, collected from P…
C_albicans_SC5314_Jun_2014/  90  5 years  aloraine   Add Candida albicans SC5314 Assembly 22 Jun_2014
P_patens_Jan_2018/  149  3 years  aloraine   Add Physcomitrella Jan 2018 v3.3 genome and annotations from Phytozome 318
V_carteri_Jul_2010/  61  6 years  aloraine   Add Volvox carteri f. nagariensis, Eve Jul 2010 assembly, collected from Phytozo…
D_pulex_Feb_2011/  108  5 years  aloraine   IGBF-1915 - Add water flea (Daphnia) genomes
O_sativa_japonica_Oct_2011/  43  6 years  aloraine   Add Oryza sativa japonica June 2009 and Oryza sativa japonica variety Os-Nipponb…
E_caballus_Sep_2007/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
Y_lipolytica_WSH-Z06_Mar_2014/  63  6 years  aloraine   Add Y_lipolytica genomes, collected from Genbank
H_sapiens_Dec_2013/  170  21 months  aloraine   IGBF-3256 Show CHESS version 3.0 gene models for hg38
C_papaya_Aug_2010/  19  6 years  aloraine   Add Carica papaya genome assembly, from Phytozome
B_taurus_Oct_2011/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
R_norvegicus_Mar_2012/  86  6 years  aloraine   Add HEADER.md for rat & cow; Fix error
C_sativa_CBDRx_Dec_2018/  122  4 years  aloraine   IGBF-2400 Add C_sativa_CBDRx_Dec_2018 genome
P_patens_Jan_2008/  44  6 years  aloraine   Add Physcomitrella patens Jan 2008 genome from CossMoss
D_rerio_Jul_2010/  88  5 years  aloraine   Add description for new genome versions ce11, chlSab2, C. albicans
E_coli_K12-MG1655_Jan_2012/  80  6 years  aloraine   Remove broken link to UCSC downloads page (it moved)
synonyms.txt  199  5 months  nfreese   IGBF-3682: Add Ramazzottius varieornatus Nov 2016 genome; Jul 8, 2024
contents.txt  197  5 months  nfreese   IGBF-3682: Add Ramazzottius varieornatus Nov 2016 genome; Jul 8, 2024
.htaccess  196  5 months  nfreese   IGBF-3682: Add Ramazzottius varieornatus Nov 2016 genome; Jul 8, 2024
species.txt  198  5 months  nfreese   IGBF-3682: Add Ramazzottius varieornatus Nov 2016 genome; Jul 8, 2024
favicon.ico  2  6 years  aloraine   Show this in place of a folder icon in IGB Available Data Sets browser
HEADER.md  180  14 months  aloraine   IGBF-3395 Improve formatting

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