/[genomes]/quickload/F_catus_Sep_2011/HEADER.md
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Contents of /quickload/F_catus_Sep_2011/HEADER.md

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Revision 80 - (show annotations)
Sat Oct 27 01:44:05 2018 UTC (4 years, 1 month ago) by aloraine
File size: 1191 byte(s)
Remove broken link to UCSC downloads page (it moved)
1 <html>
2 <body>
3 <h1>Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5) genome assembly</h1>
4 <p>
5 The files listed below are formatted for visualization in the Integrated Genome
6 Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7 </p>
8 <p>
9 Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
10 Bioinformatics Table Browser. Each file is named for its corresponding table in the
11 UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
12 this directory for details.
13 </p>
14 <p>
15 Files with extension .gz were compressed and indexed using bgzip and
16 tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
17 </p>
18 <p>
19 The file named F_catus_Sep_2011.2bit contains sequence data and is from the UCSC Genome
20 Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
21 <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from
22 F_catus_Sep_2011.2bit sequence file using twoBitInfo.
23 </p>
24 <p>
25 Both twoBitInfo and twoBitToFa are
26 available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
27 </p>
28 </body>
29 </html>

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