| 1 |
<files> |
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<file name="H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz" |
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title="RefSeq Curated" |
| 4 |
description="Data from UCSC Table Browser - RefSeq Curated (ncbiRefSeqCurated) table - updated Sep 23, 2020" |
| 5 |
url="H_sapiens_Dec_2013/" |
| 6 |
foreground="000000" |
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name_size="14" |
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direction_type="arrow" |
| 9 |
label_field="title" |
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background="FFFFFF" |
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load_hint="Whole Sequence" |
| 12 |
show2tracks="true" |
| 13 |
/> |
| 14 |
<file name="chess3.0.GRCh38.p12.bed.gz" |
| 15 |
title="CHESS gene models v.3.0" |
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description="Based on nearly 10,000 GTEx project RNA-Seq experiments re-formatted for IGB from chess3.0.gff.gz" |
| 17 |
url="https://github.com/chess-genome/chess" |
| 18 |
direction_type="arrow" |
| 19 |
name_size="14" |
| 20 |
label_field="id" |
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background="FFFFFF" |
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foreground="000000" |
| 23 |
show2tracks="true" |
| 24 |
/> |
| 25 |
<file name="H_sapiens_Dec_2013_snp153Common.bed.gz" |
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title="Genetics/Common SNPs (153)" |
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description="Data from UCSC Table Browser - common SNPs (snp153Common table) - updated Sep 30, 2020" |
| 28 |
url="H_sapiens_Dec_2013" |
| 29 |
direction_type="none" |
| 30 |
name_size="14" |
| 31 |
label_field="id" |
| 32 |
background="FFFFFF" |
| 33 |
foreground="1B4C9B" |
| 34 |
show2tracks="false" |
| 35 |
/> |
| 36 |
<file name="H_sapiens_Dec_2013_all_est.psl.gz" |
| 37 |
title="UCSC Tracks/mRNA and EST/All human EST" |
| 38 |
description="Data from UCSC Table Browser - human EST alignments (all_est table) - updated Sep 30, 2020" |
| 39 |
url="H_sapiens_Dec_2013" |
| 40 |
direction_type="arrow" |
| 41 |
max_depth="10" |
| 42 |
name_size="16" |
| 43 |
background="FFFFFF" |
| 44 |
foreground="B71725" |
| 45 |
label_field="id" |
| 46 |
show2tracks="true" |
| 47 |
/> |
| 48 |
<file name="H_sapiens_Dec_2013_all_mrna.psl.gz" |
| 49 |
title="UCSC Tracks/mRNA and EST/Human mRNAs" |
| 50 |
description="Data from UCSC Table Browser - human mRNA alignments (all_mrna table) - updated Sep 30, 2020" |
| 51 |
url="H_sapiens_Dec_2013" |
| 52 |
direction_type="arrow" |
| 53 |
max_depth="10" |
| 54 |
name_size="16" |
| 55 |
background="FFFFFF" |
| 56 |
foreground="B71725" |
| 57 |
label_field="id" |
| 58 |
show2tracks="true" |
| 59 |
/> |
| 60 |
<file name="hg38-blacklist.v2.bed.gz" |
| 61 |
title="ENCODE blacklist" |
| 62 |
description="ENCODE-identified problematic regions of the genome (hg38-blacklist.v2.bed.gz)" |
| 63 |
url="https://github.com/Boyle-Lab/Blacklist" |
| 64 |
direction_type="none" |
| 65 |
name_size="12" |
| 66 |
background="FFFFFF" |
| 67 |
foreground="000000" |
| 68 |
label_field="name" |
| 69 |
show2tracks="false" |
| 70 |
/> |
| 71 |
<file name="UCSCTracks/Assembly.bed.gz" |
| 72 |
title="UCSC Tracks/Mapping and Sequencing/Assembly" |
| 73 |
url="H_sapiens_Dec_2013/UCSCTracks/" |
| 74 |
/> |
| 75 |
<file name="UCSCTracks/Hg19_Diff.bed.gz" |
| 76 |
title="UCSC Tracks/Mapping and Sequencing/Hg19 Diff" |
| 77 |
url="H_sapiens_Dec_2013/UCSCTracks/" |
| 78 |
/> |
| 79 |
<file name="UCSCTracks/GENCODE.bed.gz" |
| 80 |
title="UCSC Tracks/Genes and Gene Predictions/GENCODE" |
| 81 |
url="H_sapiens_Dec_2013/UCSCTracks/" |
| 82 |
/> |
| 83 |
<file name="H_sapiens_Dec_2013_ncbiRefSeq.bed.gz" |
| 84 |
title="UCSC Tracks/Genes and Gene Predictions/RefSeq All" |
| 85 |
description="Data from UCSC Table Browser - RefSeq All (ncbiRefSeq table) - updated Sep 23, 2020" |
| 86 |
url="H_sapiens_Dec_2013" |
| 87 |
foreground="B71725" |
| 88 |
name_size="14" |
| 89 |
direction_type="arrow" |
| 90 |
label_field="title" |
| 91 |
background="FFFFFF" |
| 92 |
show2tracks="true" |
| 93 |
/> |
| 94 |
<file name="H_sapiens_Dec_2013_refGene.bed.gz" |
| 95 |
title="UCSC Tracks/Genes and Gene Predictions/RefGene (old)" |
| 96 |
description="Data from UCSC Genome Browser - RefGene track, updated Sep 30, 2020" |
| 97 |
foreground="000000" |
| 98 |
name_size="14" |
| 99 |
direction_type="arrow" |
| 100 |
label_field="title" |
| 101 |
background="FFFFFF" |
| 102 |
url="H_sapiens_Dec_2013/UCSCTracks/" |
| 103 |
/> |
| 104 |
<file name="UCSCTracks/RetroGenes_V9.bed.gz" |
| 105 |
title="UCSC Tracks/Genes and Gene Predictions/RetroGenes V9" |
| 106 |
url="H_sapiens_Dec_2013/UCSCTracks/" |
| 107 |
/> |
| 108 |
<file name="UCSCTracks/CpG_Islands.bed.gz" |
| 109 |
title="UCSC Tracks/Regulation/CpG Islands" |
| 110 |
url="H_sapiens_Dec_2013/UCSCTracks/" |
| 111 |
/> |
| 112 |
<file name="UCSCTracks/RepeatMasker.bed.gz" |
| 113 |
title="UCSC Tracks/Repeats/RepeatMasker" |
| 114 |
url="H_sapiens_Dec_2013/UCSCTracks/" |
| 115 |
/> |
| 116 |
<file name="UCSCTracks/RepeatMasker_Viz.bed.gz" |
| 117 |
title="UCSC Tracks/Repeats/RepeatMasker Viz" |
| 118 |
url="H_sapiens_Dec_2013/UCSCTracks/" |
| 119 |
/> |
| 120 |
<file name="cytoBand.cyt" |
| 121 |
title="Cytobands" |
| 122 |
load_hint="Whole Sequence" |
| 123 |
/> |
| 124 |
</files> |
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