/[genomes]/quickload/H_sapiens_Feb_2009/annots.xml
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Contents of /quickload/H_sapiens_Feb_2009/annots.xml

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Revision 216 - (show annotations)
Thu Mar 6 21:13:41 2025 UTC (5 days, 19 hours ago) by aloraine
File MIME type: text/xml
File size: 1701 byte(s)
IGBF-4030 Load sequence from UCSC bigzip urls for: cow 2011, cat 2011, human 2009, sheep 2010, rat 2012
1 <files>
2 <file name="https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.2bit"
3 title="Homo sapiens (Feb 2009) human being (GRCh37/hg19)"
4 reference="true"
5 />
6 <file name="cytoBand.cyt"
7 title="Cytobands"
8 load_hint="Whole Sequence"
9 />
10 <file name="H_sapiens_Feb_2009_refGene.bed.gz"
11 title="RefGene"
12 description="UCSC RefGene track (Nov 20, 2013)"
13 url="H_sapiens_Feb_2009/"
14 foreground="000000"
15 name_size="14"
16 direction_type="arrow"
17 label_field="title"
18 background="FFFFFF"
19 load_hint="Whole Sequence"
20 show2tracks="true"
21 />
22 <file name="H_sapiens_Feb_2009_all_mrna.psl.gz"
23 title="mRNA"
24 description="UCSC all mRNA track (Mar 27, 2013)"
25 url="H_sapiens_Feb_2009/"
26 max_depth="10"
27 background="FFFFFF"
28 foreground="B71725"
29 name_size="16"
30 label_field="id"
31 show2tracks="false"/>
32 <file name="H_sapiens_Feb_2009_all_est.psl.gz"
33 title="EST"
34 description="UCSC all EST track (Mar 27, 2013)"
35 url="H_sapiens_Feb_2009/"
36 direction_type="arrow"
37 max_depth="10"
38 name_size="16"
39 background="FFFFFF"
40 foreground="B71725"
41 label_field="id"
42 show2tracks="false"/>
43 <file name="hg19-blacklist.v2.bed.gz"
44 title="ENCODE blacklist"
45 description="ENCODE-identified problematic regions of the genome (hg19-blacklist.v2.bed.gz)"
46 url="https://github.com/Boyle-Lab/Blacklist"
47 direction_type="none"
48 name_size="12"
49 background="FFFFFF"
50 foreground="000000"
51 label_field="name"
52 show2tracks="false"/>
53 </files>

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