/[genomes]/quickload/P_patens_Jan_2008/HEADER.md
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Revision 44 - (show annotations)
Thu Sep 27 15:19:32 2018 UTC (2 years, 7 months ago) by aloraine
File size: 1043 byte(s)
Add Physcomitrella patens Jan 2008 genome from CossMoss
1 <html>
2 <body>
3 <h1>Physcomitrella patens (Jan 2008) genome assembly</h1>
4 <p>
5 The files listed below are formatted for visualization in the Integrated Genome
6 Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
7 </p>
8 <p>
9 The gene model annotation file (P_patens_Jan_2008.bed.gz) was made
10 from version 1.6 GFF and gene information files downloaded from the <a
11 href="https://www.cosmoss.org/physcome_project/wiki/Downloads">Cossmoss.org
12 Downloads page</a> in April, 2014.
13 </p>
14 <p>
15 The file named P_patens_Jan_2008.2bit contains sequence data. It
16 was made from fasta file also downloaded from <a
17 href="http://www.cosmoss.org">CossMoss</a>.
18 To convert it back
19 to fasta, use twoBitToFa.
20 </p>
21 The file
22 <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.
23 </p>
24 <p>
25 You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
26 </p>
27 </body>
28 </html>

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